# $Id: PLATFORMS,v 1.23 2004/03/01 14:38:20 bosborne Exp $ Perl general comments: o Perl must be 5.005 or higher. We tend to test on 5.6 Perl. Perl 5.8 definitely works, but might have small errors o Perl on Digital Unix, WindowsNT, and MacOS has been reported to have problems with the Bio::DB::GDB on module (and consequently the test GDB.t). This is due to different versions of HTML::Parser. o DB.t has intermittent time-out failures (which will most likely cause tests 3 and/or 27 to fail). o Index.t will fail if you have an out-of-date DBM file installation or a bad DB_File installation Tested systems & OS Specific Comments or Warnings ================================================== Machine : RedHat Linux 7.2 i686 Compiler: cc Perl : 5.004-5.6.1 Comments: XML::Writer tests fails (segfault), but do an install/force anyways and all will work. Machine : Linux i386 Compiler: cc Perl : 5.004-5.6.1 Comments: none Machine : Digital Unix Compiler: cc Perl : 5.004 Comments: Failure on GDB.t, possibly due to LWP cissues Machine : OpenBSD 2.8 i386 Compiler: cc Perl : 5.6.0 Comments: none Machine : Solaris 2.8 UltraSparc Compiler: gcc Perl : 5.6.0 Comments: none Machine : FreeBSD 4.2 i386 Compiler: gcc Perl : 5.005_03 Comments: none Machine : IRIX64 6.5 SGI Compiler: cc Perl : 5.004_04 Comments: Some warnings about which can be safely ignored. Bio::DB::GenBank/GenPept cannot be used because IO::String cannot be installed on 5.004. Bio::DB::GDB will not work on pre 5.005 versions of perl. The makefile's should now work without shell modifications. Let us know if that's an issue Machine : Win32, WinNT i386 Compiler: -- Perl : ActiveState Perl 5.6, 5.5.1, 5.8 Comments: Be sure that the module DB_File is installed and up-to-date to allow Bio::Index modules to work properly. Installing ppm's IO-stringy and IO-String and File-Temp are necessary as well. See INSTALL.WIN for more information Machine : CygWin NT_5 v. 1.3.10,18 on Windows 2000 5.00 Compiler: gcc Perl : 5.6.1,5.8 Comments: See INSTALL.WIN for more information Machine : MacOS Compiler: -- Perl : MacPerl Comments: We don't recommend using Bioperl on MacOS 9 systems Machine : MacOS X Compiler: gcc Perl : 5.6.0 Comments: Steve Cannon has made available Bioperl OS X installation directions and notes online at the following URL: http://www.tc.umn.edu/~cann0010/Bioperl_OSX_install.html Machine : HP-UX / PA-RISC 11.0 Compiler: gcc Perl : 5.6.1 Comments: Tested by (dag@sonsorol.org) on a barebones 8-cpu system without the various dependencies installed. All tests pass except those skipped by the test harness due to missing external packages. Thanks due to HP for providing the OBF with an Itanium workstation plus internet access to other HP test platforms. Feedback from HP-UX users is appreciated. Machine : HP-UX / Itanium ('ia64') 11.0 Compiler: gcc Perl : 5.6.1 Comments: Tested by (dag@sonsorol.org) on a barebones 4-cpu system without the various dependencies installed. 96% of the tests pass; OBF is working on getting 100% pass rate. Thanks due to HP for providing the OBF with an Itanium workstation plus internet access to other HP test platforms. Feedback from HP-UX users is appreciated.