Bioperl 1.5.2 Release
Wednesday, December 6th, 2006I'm proud to announce the final release of Bioperl 1.5.2. Full details are available at http://www.bioperl.org/wiki/Release_1.5.2
Archive for the ‘Code’ Category
I'm proud to announce the final release of Bioperl 1.5.2. Full details are available at http://www.bioperl.org/wiki/Release_1.5.2
RC5 for 1.5.2
Monday, November 27th, 2006Sendu has posted 1.5.2 RC5. There may be a few more kinks to work out, so try this release and report if there are problems with the tests.
RC 1.5.3
Thursday, November 9th, 2006Sendu has announced that Release Candidate 3 is available for download and testing. This may be the last RC before the 1.5.2 release so give it a whirl and speak up with any problems or concerns.
Mediawiki updated
Thursday, November 9th, 2006Bioperl wiki is now running Mediawiki 1.8.2. nothing too different under the hood at this point, the mediawiki people probably have more to say in the release-notes.
Next BioPerl Release
Thursday, August 10th, 2006We are currently planning a timetable for the next few Bioperl releases, including the next developer release (v1.5.2), the next stable release (1.6) and beyond. Users are welcome to add requests (within reason!), donate code, etc. Lots of changes in store! The release schedule can be found here. ...
Modware: a BioPerl based API for Chado
Thursday, May 18th, 2006We are announcing a new Sourceforge Project called Modware. It is an object-oriented API written in Perl that creates BioPerl object representations of biological features stored in a Chado database. It basically creates a Bio::Seq object for chromosomes in Chado and creates Bio::SeqFeature::Gene objects for protein coding transcripts stored in ...
Deobfuscator interface now available
Sunday, May 14th, 2006I'm glad to announce the availability of the Deobfuscator interface at the BioPerl website. You can use it at the following URL: http://bioperl.org/cgi-bin/deob_interface.cgi Many thanks to Laura Kavanaugh and David Messina for this great contribution to the BioPerl project!
ListSummaries for April 26-May 9
Wednesday, May 10th, 2006ListSummaries for April 26-May 9 are up at the usual place: http://www.bioperl.org/wiki/Mailing_list_summaries Direct link: http://www.bioperl.org/wiki/ListSummary:April_26-May_9%2C2006 It’s a bit of a hurried one so don’t be surprised to find a few spelling errors here and there. I’m getting ready for a conference in a couple weeks so I may be off the radar a ...
Bioperl ListSummaries for April 12-25
Tuesday, April 25th, 2006The newest summary of the BioPerl mailing lists has been posted to the wiki: April 12-25 Post gripes, harrassments, and faint praises at the regular places.
BioPerl Mailing List Summaries
Tuesday, April 11th, 2006The first of a biweekly summary of BioPerl mailing list summaries has been posted to the wiki: April 1-11 These will likely be archived on the wiki but may be moved to a more suitable location in the future (maybe to this blog?).