Archive for the ‘BioPerl’ Category
Tuesday, April 6th, 2004
The Mailing list post
Continuing on the BioJava Bootcamp of 2003, The Quebec Bioinformatics
Network (BioneQ) is organizing its first BioPerl Bootcamp, to be held at the
Universite de Montreal from June 21-25 2004.
The invited speakers are leaders in the use of Perl in bioinformatics and
development of BioPerl:
Aaron Mackey (U. of Pennsylvania)
Jason Stajich ...
Posted in BioPerl | Comments Off
Friday, February 20th, 2004
Bioperl version 1.4 for Windows is available. Thanks once again to Nigam Shah for creating and testing the PPM and PPD files.
Posted in BioPerl | Comments Off
Wednesday, February 18th, 2004
BioKnoppix is a new live CD linux, based on
KNOPPIX, with EMBOSS 2.8.0, jemboss, artemis, clustalx, Cn3D, ImageJ, BioPython, Rasmol, Bioperl, Bioconductor. It being made available by The University of Puerto Rico High Performance Computing facility (HPCf) and the Puerto Rico Biomedical Research Infrastructure Network (BRIN-PR). Great stuff!
Posted in BioPerl, BioPython, General | Comments Off
Tuesday, December 23rd, 2003
The stable Bioperl release 1.4 is available for immediate use at:
http://bioperl.org/DIST.
We are releasing simultaneously three modules:
bioperl-core - core bioperl modules (
gz
b2z)
bioperl-ext - C compiled extensions (
gz
b2z)
bioperl-run - wrappers for external programs (
gz
b2z)
They will also appear shortly at
the IUBIO mirror (later today)
and in
CPAN.
Remember, all the external modules needed by ...
Posted in BioPerl | Comments Off
Wednesday, November 26th, 2003
Todd Harris has released
GD::SVG
in
CPAN. This module implements support for most features of GD that are used by Bio::Graphics (together with the
SVG module).
Try out the publication publication quality graphics
directly from
CVS and help to squash the last bugs before stable bioperl release. See all_glyphs.pl and dynamic_glyphs.pl in examples/biographics directory.
Posted in BioPerl | Comments Off
Monday, November 24th, 2003
Need to write a wrapper around sequence analysis service in a web form?
Richard Adams has written
a HOWTO document about his
Bio::Tools::Analysis modules. Available in CVS or in the latest developer release. See into BIOPERL/doc/howto/{sgml|html|pdf|txt}
for the SimpleWebAnalysis document in your favourite format.
(more...)
Posted in BioPerl | Comments Off
Sunday, September 21st, 2003
I posted the slides for the Bioperl-db/BioSQL talk I gave at BOSC03.
-hilmar
Posted in BOSC/ISMB, BioPerl, OBDA / BioSQL | Comments Off
Friday, September 19th, 2003
The Bioperl developers are pleased to announce a 0.1 release of
bioperl-microarray, a Bioperl extension package dedicated to manipulation of microarray data.
The package is implemented using IO conventions Bioperl developers should already be familiar with. Data types currently supported are:
Affymetrix GeneChip CEL files (read and write)
Affymetrix GeneChip CDF files (read)
Affymetrix ...
Posted in BioPerl | No Comments »
Thursday, September 18th, 2003
Bioperl 1.2.3
On behalf of the Bioperl developers, we are pleased to announce the release of Bioperl 1.2.3. This is the set of Core libraries which constitutes Bioperl and covers areas like Sequence file parsing, Sequence Feature representations, Database access to flatfile web-based sequence databases, Alignment parsing and manipulation, parsing ...
Posted in BioPerl | Comments Off
Saturday, August 30th, 2003
Hi Everyone,
Apologies for the mass cross-posting but this email is about server and IP changes that will affect all of our projects and servers.
Simply put -- Wyeth, the company that provides us with our hosting and wonderful T3 connection to the internet is cutting their internet connection circuits over from ...
Posted in BioDAS, BioJava, BioMOBY, BioPerl, BioPython, General, OBDA / BioSQL | Comments Off