Bioperl-guts: description in blast report

Bo Yuan, Ph.D.
Mon, 26 Apr 1999 13:37:07 -0400

Dear bioperler:

I was not able to get the description of subject into the result table
when I use seq/*.fasta -eseq -prog blastn -db est_human -signif 1e-25
-wait 800 -expect 0.01 -html -nostats -desc -table 1 best  > ../est.hits

Can anyone help me with this?  We would very much want to have the hits
in the table with the subject descriptions parsed.

Secondly, is there a script that can be used to create html links to the
subjects in the table.  We use Seals's hotgi, but it does not work on
the acc#.

Thank you in advance for your time and help!


Bo Yuan, Ph.D.
Human Cancer Genetics Program
The Ohio State University

420 West 12th Ave., Rm 424
Medical Research Facility
Columbus, OH 43210

Phone:  (614) 292-0656
Fax:    (614) 688-4761

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