Bioperl-guts: Notification: incoming/38

Aaron J Mackey ajm6q@virginia.edu
Thu, 29 Apr 1999 18:14:27 -0400 (EDT)


I get this every time I use SeqIO.  I think it's somthing fishy in the
DESTROY sub.  Here's my perl -V

Summary of my perl5 (5.0 patchlevel 4 subversion 4) configuration:
  Platform:
    osname=linux, osvers=2.0.34, archname=i386-linux
    uname='linux porky.redhat.com 2.0.34 #1 thu may 7 10:17:44 edt 1998
i686 unknown '
    hint=recommended, useposix=true, d_sigaction=define
    bincompat3=y useperlio=undef d_sfio=undef
  Compiler:
    cc='cc', optimize='-O2', gccversion=2.7.2.3
    cppflags='-Dbool=char -DHAS_BOOL -I/usr/local/include'
    ccflags ='-Dbool=char -DHAS_BOOL -I/usr/local/include'
    stdchar='char', d_stdstdio=define, usevfork=false
    intsize=4, longsize=4, ptrsize=undef, doublesize=undef
    alignbytes=4, usemymalloc=n, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib
    libs=-lnsl -lndbm -lgdbm -ldb -ldl -lm -lc -lposix -lcrypt
    libc=, so=so
    useshrplib=false, libperl=libperl.a
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-rdynamic'
    cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'


Characteristics of this binary (from libperl):
  Locally applied patches:
        MAINT_TRIAL_4 - 5.004_05 maintenance trial 4
  Built under linux
  Compiled at Sep 10 1998 02:16:22
  %ENV:
    PERLLIB="/home/ajm6q/perl/lib"
  @INC:
    /home/ajm6q/perl/lib
    /usr/lib/perl5/i386-linux/5.00404
    /usr/lib/perl5
    /usr/lib/perl5/site_perl/i386-linux
    /usr/lib/perl5/site_perl
    .


On Thu, 29 Apr 1999 bioperl-bugs@bioperl.sonsorol.org wrote:

> JitterBug notification
> 
> new message incoming/38
> 
> Message summary for PR#38
> 	From: dag@sonsorol.org
> 	Subject: (0.05) SeqIO.t warning message during make test
> 	Date: Thu, 29 Apr 1999 17:33:49 -0400
> 	0 replies 	0 followups
> 
> ====> ORIGINAL MESSAGE FOLLOWS <====
> 
> >From dag@sonsorol.org  Thu Apr 29 17:33:50 1999
> Received: from localhost (localhost [127.0.0.1])
> 	by bioperl.sonsorol.org (8.8.7/8.8.7) with ESMTP id RAA30475
> 	for <bioperl-bugs@bioperl.sonsorol.org>; Thu, 29 Apr 1999 17:33:49 -0400
> Date: Thu, 29 Apr 1999 17:33:49 -0400
> From: dag@sonsorol.org
> Message-Id: <199904292133.RAA30475@bioperl.sonsorol.org>
> To: bioperl-bugs@bioperl.sonsorol.org
> Subject: (0.05) SeqIO.t warning message during make test
> 
> Full_Name: Chris Dagdigian
> Module: Bio::SeqIO.pm ?
> Version: dist 0.05
> OS: Linux-ppc
> Submission from: genetics-bh.genetics.com (199.93.107.66)
> 
> 
> This is a reminder bug submission -- Ewan and I
> noticed this a few days ago.....
> 
> Machine: Linux-ppc running on a PowerMac 7600
> Compiler: cc
> Perl: version 5.004_04 built for linux-ppc
> 
> During 'make test' or 'perl t/SeqIO.t' the test
> script passes all 9 tests fine but exits with
> the following warning message:
> 
> 'Attempt to free unreferenced scalar during
> global destruction'
> 
> Have not seen this message on any other system
> as of yet.
> 
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-- 
 o ~   ~   ~   ~   ~   ~  o
/ Aaron J Mackey           \
\  Dr. Pearson Laboratory  / 
 \ University of Virginia  \     
 /  (804) 924-2821          \
 \  amackey@virginia.edu    /
  o ~   ~   ~   ~   ~   ~  o


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