Bioperl-guts: codon usage?
Gordon D. Pusch
Wed, 15 Sep 1999 14:40:28 -0500
Andreas Matern <email@example.com> wrote:
> I was trolling through some bioperl guts stuff when I came across a
> thread re:codon usage in bioperl (appended). Is anyone working on
> such a pm? It would be extremely valuable....
I am currently working on scripts to efficiently compute and
manipulate such statistics, as well as Bayesian estimator and
decision-theory algorithms to detect such ``spelling changes.''
Unfortunately, they are mostly ``stand-alone'' scripts, rather
than BioPerl-type OOP-modules, since I am not yet comfortable
with the OOP style (I am a physicist by training, so prior to
a couple years ago, I wrote everything in <*!blech!*> FORTRAN... :-(
I am trying to learn how to code in the the OOP style, but am finding
the learning-curve almost unclimbable, and so far have not had time
to actually practice coding it --- I have a VERY tight crisis-schedule,
and WAY too many of the items on my plate absolutely positively =HAVE=
to be done CRUDELY by YESTERDAY, rather than elegantly by next month... :-(
Gordon D. Pusch | Internet: <firstname.lastname@example.org>
Math and C.S. Div., Bldg.221/D236 | FAX: (630) 252-5986
Argonne National Laboratory | Phone: (630) 252-5195 (Off)
9700 South Cass Ave. | (630) 369-7544 (Hm)
Argonne, IL USA 60439-4844 | http://www-unix.mcs.anl.gov/~pusch/
Disclaimer: I'm a consultant collaborating with Argonne researchers;
I don't speak for ANL or the DOE --- and they *certainly* don't speak
for =ME= !!!
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