Bioperl-guts: bioxml-bioperl parser
Ewan Birney
birney@ebi.ac.uk
Fri, 31 Mar 2000 15:03:46 +0100 (GMT)
On Fri, 31 Mar 2000, Heikki Lehvaslaiho wrote:
> Brad,
>
> Your code looks like a great start.
Brad - I tried the code out but it was unclear which XML modules I needed
to pick up. Can the read me list the CPAN packages which you need to
install.
I added to the branch (sneakily) discovered I could not test it so I
removed it again ;).
>
> Why do not you put into bioperl-live CVS. Having it there right from
> the beginning should save us all from lot of hassle when the codes
> starts evolving.
>
The main trunk is now on 0.7 code - ie you can mess around with the main
trunk as much as possible. I could add it to the main trunk of course.
Perhaps I will do that.
> -Heikki
>
>
> Bradley Marshall wrote:
> >
> > Hey guys,
> >
> > It's Brad from bioxml. I just wanted to let everyone
> > know that I've posted a preliminary bioxml SeqIO
> > module to the bioxml mailing list. You can use it to
> > parse bioxml sequences into a bioperl Seq object and
> > vice versa, so if you've been thinking about checking
> > out xml, this may be your chance...
> >
> > It's on the bioxml mailing list, here:
> >
> > http://www.bioxml.org/pipermail/bioxml-dev/2000-March/000033.html
> >
> > It looks a little garbled, I'll post the files on the
> > web page soon.
> >
> > Brad
> >
> > __________________________________________________
> > Do You Yahoo!?
> > Talk to your friends online with Yahoo! Messenger.
> > http://im.yahoo.com
> > =========== Bioperl Project Mailing List Message Footer =======
> > Project URL: http://bio.perl.org
> > For info about how to (un)subscribe, where messages are archived, etc:
> > http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl-guts.html
> > ====================================================================
>
> --
> ______ _/ _/_____________________________________________________
> _/ _/ http://www2.ebi.ac.uk/mutations/
> _/ _/ _/ Heikki Lehvaslaiho heikki@ebi.ac.uk
> _/_/_/_/_/ EMBL Outstation, European Bioinformatics Institute
> _/ _/ _/ Wellcome Trust Genome Campus, Hinxton
> _/ _/ _/ Cambs. CB10 1SD, United Kingdom
> _/ Phone: +44 (0)1223 494 644 FAX: +44 (0)1223 494 468
> ___ _/_/_/_/_/________________________________________________________
> =========== Bioperl Project Mailing List Message Footer =======
> Project URL: http://bio.perl.org
> For info about how to (un)subscribe, where messages are archived, etc:
> http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl-guts.html
> ====================================================================
>
-----------------------------------------------------------------
Ewan Birney. Mobile: +44 (0)7970 151230
<birney@ebi.ac.uk>
-----------------------------------------------------------------
=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl-guts.html
====================================================================