[Bioperl-guts-l] bioperl commit

Ewan Birney birney@ebi.ac.uk
Wed, 6 Sep 2000 08:10:34 +0100 (GMT)


On Tue, 5 Sep 2000, Hilmar Lapp wrote:

> 
> lapp
> bioperl-live/Bio/SeqIO swiss.pm
> Tue Sep  5 18:05:40 EDT 2000
> Update of /home/repository/bioperl/bioperl-live/Bio/SeqIO
> In directory pw600a.bioperl.org:/tmp/cvs-serv26719
> 
> Modified Files:
> 	swiss.pm 
> Log Message:
> Removed again _$div from output ID line generation. Guys, you cannot
> have there $seq->display_id()."_".$div, it is simply
> wrong. display_id() is set to the *full* ID (primary_id()."_".$div) in
> next_seq(), and adding $div a second time cannot be correct. This also
> means that any sequence _read_ by swiss.pm should have the correct ID
> on output. If this is not the case for you please indicate an example record
> (hlapp@gmx.net). In addition, it makes seqs retrieved from GenPept
> being written with at least the correct ID, which is essential IMHO.


I agree completely with hilmar here.


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