[Bioperl-guts-l] Notification: incoming/161

bioperl-bug-admin@bioperl.org bioperl-bug-admin@bioperl.org
Thu, 14 Sep 2000 06:58:08 -0400


JitterBug notification

hilmar moved PR#161 from incoming to Fixed-Bugs
Message summary for PR#161
	From: katel@worldpath.net
	Subject: dropped sequence
	Date: Fri, 12 Nov 1999 03:21:35 -0500
	0 replies 	0 followups
	Notes: Fixed. This was related to the unability to parse GenPept records, which
is now functional in the main trunk. It may not make it to the 0.6.2 release
(?). HL 2000/09/14


====> ORIGINAL MESSAGE FOLLOWS <====

>From katel@worldpath.net  Fri Nov 12 03:21:35 1999
Received: from localhost (IDENT:nobody@localhost [127.0.0.1])
	by pw600a.bioperl.org (8.9.3/8.9.3) with ESMTP id DAA22700
	for <bioperl-bugs@pw600a.bioperl.org>; Fri, 12 Nov 1999 03:21:35 -0500
Date: Fri, 12 Nov 1999 03:21:35 -0500
From: katel@worldpath.net
Message-Id: <199911120821.DAA22700@pw600a.bioperl.org>
To: bioperl-bugs@bioperl.org
Subject: dropped sequence

Full_Name: Katharine Lindner
Module: genbank.pm
Version: development 11/10/99
OS: win98
Submission from: pm41-112-134.worldpath.net (209.187.112.134)


source has

FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Viola soraria"
                     /chloroplast
                     /db_xref="taxon:13758"
                     1..441
     Protein         <1..441
                     /product="RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN"
                     /EC_number="4.1.1.39"
     Site            167
                     /site_type="active"
                     /note="BINDING OF CO(2) ACTIVATES THE ENZYME (BY
                     SIMILARITY)."
ORIGIN
        1 dilaafrvtp qpgvppeeag aavaaesstg twttvwtdgl tsldrykgrc ydiepvpgex
       61 xxxxxxxxxx xdlfeegsvt nmftsxvgnv fgfxxxralr ledlrippay tktfqgpphg
      121 iqverdklnk ygrpilgcti kpklglsakn ygravyeclr ggldftkdde nvnsqpfmrw
      181 rdrflfcaea iyksqaetge ikghylnata gtceemikra vfarelgvpi vmhdyltggf
      241 tanttlahyc rdngllfhih ramhavidrq knhgmhfrvl akalrmsggd hvhsgtvvgk
      301 legerditlg fvdllrddyv ekdrsrgiyf tqdwvslpgv lpvasggihv whmpalteif
      361 gddsvlqfgg gtlghpwgnr pgaxxnrval eacvkarneg rdlaregnei ireaakwspe
      421 laaacevwke ikfefeamdt i
//

  Output is
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Viola soraria"
                     /db_xref="taxon:13758"
                     /chloroplast
     Protein         1..441
                     /EC_number="4.1.1.39"
                     /product="RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN"
     Site            167..167
                     /site_type="active"
                     /note="BINDING OF CO(2) ACTIVATES THE ENZYME
(BYSIMILARITY)
                     ."
BASE COUNT        0 a      0 c      0 g      0 t
ORIGIN

//