[Bioperl-guts-l] bioperl commit

Brian Osborne bosborne at dev.open-bio.org
Fri Feb 7 13:01:51 EST 2003


Fri Feb  7 13:01:51 EST 2003
Update of /home/repository/bioperl/bioperl-live
In directory dev:/tmp/cvs-serv28302

Modified Files:
	biodatabases.PL 
Log Message:
Added note on setting env's
bioperl-live biodatabases.PL,1.2,1.3
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/biodatabases.PL,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /tmp/T0yaaGt3	2003-02-07 13:01:51.390005687 -0500
+++ /tmp/T1zaaGt3	2003-02-07 13:01:51.400005072 -0500
@@ -36,7 +36,7 @@
 
 =over 2
 
-=item scripts/bpfetch.pl 
+=item scripts/bpfetch.pl
 
 Fetches sequences from a Database
 
@@ -166,8 +166,11 @@
 or any other directory
 
    setenv BIOPERL_INDEX /nfs/datadisk/bioperlindex/
+   setenv BIOPERL_INDEX_TYPE DB_File
 
-in .cshrc or .tcshrc (or B<set> and B<export> in bash and its .bashrc)
+in .cshrc or .tcshrc (or B<set> and B<export> in bash and its .bashrc).
+Another BIOPERL_INDEX_TYPE is SDBM_File, this one should come with a
+standard Perl package.
 
 go 
 



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