[Bioperl-guts-l] bioperl commit

Allen Day allenday at pub.open-bio.org
Mon Aug 30 18:44:57 EDT 2004


allenday
Mon Aug 30 18:44:57 EDT 2004
Update of /home/repository/bioperl/bioperl-live/Bio
In directory pub.open-bio.org:/tmp/cvs-serv28014/Bio

Modified Files:
	FeatureIO.pm 
Log Message:
adding BED module.  write-only, and not yet tested.

http://www.genome.ucsc.edu/goldenPath/help/customTrack.html#BED


bioperl-live/Bio FeatureIO.pm,1.2,1.3
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/FeatureIO.pm,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/bioperl/bioperl-live/Bio/FeatureIO.pm	2004/08/13 20:52:46	1.2
+++ /home/repository/bioperl/bioperl-live/Bio/FeatureIO.pm	2004/08/30 22:44:57	1.3
@@ -43,6 +43,13 @@
 
 FIXME
 
+=head1 SUPPORTED FORMATS
+
+name                      module
+--------------------------------
+GFF (version 3 only)      gff.pm
+BED                       bed.pm
+
 #Bio::SeqIO is a handler module for the formats in the SeqIO set (eg,
 #Bio::SeqIO::fasta). It is the officially sanctioned way of getting at
 #the format objects, which most people should use.



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