[Bioperl-guts-l] bioperl commit

Mark Wilkinson mwilkinson at pub.open-bio.org
Sun Jan 11 10:02:38 EST 2004


mwilkinson
Sun Jan 11 10:02:38 EST 2004
Update of /home/repository/bioperl/bioperl-live/Bio
In directory pub.open-bio.org:/tmp/cvs-serv10441/Bio

Modified Files:
	PrimarySeq.pm Seq.pm 
Log Message:
fixing docs to indicate that these objects have get/set on the alphabet call

bioperl-live/Bio PrimarySeq.pm,1.79,1.80 Seq.pm,1.81,1.82
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/PrimarySeq.pm,v
retrieving revision 1.79
retrieving revision 1.80
diff -u -r1.79 -r1.80
--- /home/repository/bioperl/bioperl-live/Bio/PrimarySeq.pm	2003/07/19 22:20:30	1.79
+++ /home/repository/bioperl/bioperl-live/Bio/PrimarySeq.pm	2004/01/11 15:02:37	1.80
@@ -532,7 +532,7 @@
 
  Title   : alphabet
  Usage   : if( $obj->alphabet eq 'dna' ) { /Do Something/ }
- Function: Returns the alphabet of sequence, one of
+ Function: Get/Set the alphabet of sequence, one of
            'dna', 'rna' or 'protein'. This is case sensitive.
 
            This is not called <type> because this would cause
@@ -541,7 +541,7 @@
  Returns : a string either 'dna','rna','protein'. NB - the object must
            make a call of the type - if there is no alphabet specified it
            has to guess.
- Args    : none
+ Args    : optional string to set : 'dna' | 'rna' | 'protein'
 
 
 =cut

===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Seq.pm,v
retrieving revision 1.81
retrieving revision 1.82
diff -u -r1.81 -r1.82
--- /home/repository/bioperl/bioperl-live/Bio/Seq.pm	2003/09/24 13:05:55	1.81
+++ /home/repository/bioperl/bioperl-live/Bio/Seq.pm	2004/01/11 15:02:37	1.82
@@ -780,7 +780,7 @@
 
  Title   : alphabet
  Usage   : if ( $obj->alphabet eq 'dna' ) { /Do Something/ }
- Function: Returns the type of sequence being one of
+ Function: Get/Set the type of sequence being one of
            'dna', 'rna' or 'protein'. This is case sensitive.
 
            This is not called <type> because this would cause
@@ -789,7 +789,7 @@
  Returns : A string either 'dna','rna','protein'. NB - the object must
            make a call of the type - if there is no type specified it
            has to guess.
- Args    : None
+ Args    : optional string to set : 'dna' | 'rna' | 'protein'
 
 
 =cut



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