[Bioperl-guts-l] bioperl commit

Heikki Lehvaslaiho heikki at pub.open-bio.org
Thu May 13 13:37:15 EDT 2004


heikki
Thu May 13 13:37:15 EDT 2004
Update of /home/repository/bioperl/bioperl-live/Bio/Tools
In directory pub.open-bio.org:/tmp/cvs-serv32028

Modified Files:
	SeqStats.pm 
Log Message:
0.01 dalton adjustments to amino acid molweights to match those in SWISS-PROT.

bioperl-live/Bio/Tools SeqStats.pm,1.18,1.19
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Tools/SeqStats.pm,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -r1.18 -r1.19
--- /home/repository/bioperl/bioperl-live/Bio/Tools/SeqStats.pm	2003/07/22 15:37:06	1.18
+++ /home/repository/bioperl/bioperl-live/Bio/Tools/SeqStats.pm	2004/05/13 17:37:15	1.19
@@ -148,6 +148,9 @@
 
 Ewan moved it from Bio::SeqStats to Bio::Tools::SeqStats
 
+Heikki made tiny adjustments (+/- 0.01 daltons) to amino acid
+molecular weights to have the output match values in SWISS-PROT.
+
 =head1 FEEDBACK
 
 =head2 Mailing Lists
@@ -162,8 +165,8 @@
 =head2 Reporting Bugs
 
 Report bugs to the Bioperl bug tracking system to help us keep track
- the bugs and their resolution.
- Bug reports can be submitted via email or the web:
+the bugs and their resolution.  Bug reports can be submitted via email
+or the web:
 
   bioperl-bugs at bio.perl.org
   http://bugzilla.bioperl.org/
@@ -221,19 +224,19 @@
     my $amino_F_wt = 165.19;
     my $amino_G_wt = 75.07;
     my $amino_H_wt = 155.16;
-    my $amino_I_wt = 131.18;
+    my $amino_I_wt = 131.17;
     my $amino_K_wt = 146.19;
-    my $amino_L_wt = 131.18;
-    my $amino_M_wt = 149.22;
+    my $amino_L_wt = 131.17;
+    my $amino_M_wt = 149.21;
     my $amino_N_wt = 132.12;
     my $amino_P_wt = 115.13;
     my $amino_Q_wt = 146.15;
-    my $amino_R_wt = 174.21;
+    my $amino_R_wt = 174.20;
     my $amino_S_wt = 105.09;
     my $amino_T_wt = 119.12;
     my $amino_U_wt = 168.06;
     my $amino_V_wt = 117.15;
-    my $amino_W_wt = 204.22;
+    my $amino_W_wt = 204.23;
     my $amino_Y_wt = 181.19;
 
 



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