[Bioperl-guts-l] [Bug 1645] New: No score for bl2seq - hit

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed May 26 06:34:14 EDT 2004


http://bugzilla.bioperl.org/show_bug.cgi?id=1645

           Summary: No score for bl2seq - hit
           Product: Bioperl
           Version: unspecified
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: minor
          Priority: P2
         Component: Bio::Search/Bio::SearchIO
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: james.wasmuth at ed.ac.uk


Trying to extract the raw score from a SearchIO::hit object and get nothing
back. The report file is bl2seq format. 

The $hit->bits is fine.

Can get $hsp->score but not $hit->(raw_)?score.



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