[Bioperl-guts-l] [Bug 1824] SeqWithQuality constructor does not correctly handle -qual => '0' corner case

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Jul 7 13:07:02 EDT 2005


http://bugzilla.open-bio.org/show_bug.cgi?id=1824

heikki at ebi.ac.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
             Status|ASSIGNED                    |RESOLVED
         Resolution|                            |FIXED



------- Additional Comments From heikki at ebi.ac.uk  2005-07-07 13:07 -------
Robert replied: 
 
I know that phred, at least, can produce quality values of 0 in its  
.phd.1 output from basecalling trace files.  In the pipeline I am  
constructing, phred produces quality values of 0 mostly when it tries to  
basecall the trace from a failed sequencing read. 
 
Commiting fix. 



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