[Bioperl-guts-l] bioperl-live/Bio/Index Fastq.pm,1.6,1.7

Heikki Lehvaslaiho heikki at pub.open-bio.org
Wed Jul 13 08:29:19 EDT 2005


Update of /home/repository/bioperl/bioperl-live/Bio/Index
In directory pub.open-bio.org:/tmp/cvs-serv19339/Bio/Index

Modified Files:
	Fastq.pm 
Log Message:
removing Bio:Seq::SeqWithQuality in favour of Bio::Seq::Quality


Index: Fastq.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Index/Fastq.pm,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** Fastq.pm	4 Jun 2003 08:36:40 -0000	1.6
--- Fastq.pm	13 Jul 2005 12:29:16 -0000	1.7
***************
*** 36,40 ****
  
      foreach my $id (@ARGV) {
!         my $seq = $inx->fetch($id); # Returns Bio::Seq::SeqWithQuality object
  	$out->write_seq($seq);
      }
--- 36,40 ----
  
      foreach my $id (@ARGV) {
!         my $seq = $inx->fetch($id); # Returns Bio::Seq::Quality object
  	$out->write_seq($seq);
      }



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