[Bioperl-guts-l] bioperl-live/Bio/Coordinate Chain.pm, 1.1, 1.1.8.1 Collection.pm, 1.19, 1.19.2.1 ExtrapolatingPair.pm, 1.10, 1.10.4.1 GeneMapper.pm, 1.22, 1.22.2.1 Graph.pm, 1.5, 1.5.2.1 MapperI.pm, 1.5, 1.5.8.1 Pair.pm, 1.14, 1.14.2.1 Result.pm, 1.9, 1.9.2.1 ResultI.pm, 1.1, 1.1.6.1 Utils.pm, 1.11, 1.11.2.1

Jason Stajich jason at pub.open-bio.org
Sun Oct 9 11:16:23 EDT 2005


Update of /home/repository/bioperl/bioperl-live/Bio/Coordinate
In directory pub.open-bio.org:/tmp/cvs-serv31751/Bio/Coordinate

Modified Files:
      Tag: bioperl-branch-1-5-1
	Chain.pm Collection.pm ExtrapolatingPair.pm GeneMapper.pm 
	Graph.pm MapperI.pm Pair.pm Result.pm ResultI.pm Utils.pm 
Log Message:
Merged from HEAD to 1.5.1 branch, changes which remove old bug email address and point to bugzilla.bioperl.org website for bug submission


Index: Pair.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/Pair.pm,v
retrieving revision 1.14
retrieving revision 1.14.2.1
diff -C2 -d -r1.14 -r1.14.2.1
*** Pair.pm	23 Feb 2004 21:42:01 -0000	1.14
--- Pair.pm	9 Oct 2005 15:16:20 -0000	1.14.2.1
***************
*** 70,77 ****
  
  report bugs to the Bioperl bug tracking system to help us keep track
!  the bugs and their resolution.  Bug reports can be submitted via
!  email or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 70,76 ----
  
  report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  

Index: Collection.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/Collection.pm,v
retrieving revision 1.19
retrieving revision 1.19.2.1
diff -C2 -d -r1.19 -r1.19.2.1
*** Collection.pm	23 Feb 2004 22:07:13 -0000	1.19
--- Collection.pm	9 Oct 2005 15:16:20 -0000	1.19.2.1
***************
*** 68,75 ****
  
  report bugs to the Bioperl bug tracking system to help us keep track
!  the bugs and their resolution.  Bug reports can be submitted via
!  email or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 68,74 ----
  
  report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  

Index: GeneMapper.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/GeneMapper.pm,v
retrieving revision 1.22
retrieving revision 1.22.2.1
diff -C2 -d -r1.22 -r1.22.2.1
*** GeneMapper.pm	23 Feb 2004 21:42:01 -0000	1.22
--- GeneMapper.pm	9 Oct 2005 15:16:20 -0000	1.22.2.1
***************
*** 121,128 ****
  
  Report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via email
! or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 121,127 ----
  
  Report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  

Index: ExtrapolatingPair.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/ExtrapolatingPair.pm,v
retrieving revision 1.10
retrieving revision 1.10.4.1
diff -C2 -d -r1.10 -r1.10.4.1
*** ExtrapolatingPair.pm	11 Feb 2003 09:05:16 -0000	1.10
--- ExtrapolatingPair.pm	9 Oct 2005 15:16:20 -0000	1.10.4.1
***************
*** 70,77 ****
  
  report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via email
! or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 70,76 ----
  
  report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  

Index: ResultI.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/ResultI.pm,v
retrieving revision 1.1
retrieving revision 1.1.6.1
diff -C2 -d -r1.1 -r1.1.6.1
*** ResultI.pm	12 Feb 2003 10:58:35 -0000	1.1
--- ResultI.pm	9 Oct 2005 15:16:20 -0000	1.1.6.1
***************
*** 38,45 ****
  
  report bugs to the Bioperl bug tracking system to help us keep track
!  the bugs and their resolution.  Bug reports can be submitted via
!  email or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 38,44 ----
  
  report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  

Index: Chain.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/Chain.pm,v
retrieving revision 1.1
retrieving revision 1.1.8.1
diff -C2 -d -r1.1 -r1.1.8.1
*** Chain.pm	24 Oct 2002 17:35:30 -0000	1.1
--- Chain.pm	9 Oct 2005 15:16:20 -0000	1.1.8.1
***************
*** 66,75 ****
  =head2 Reporting Bugs
  
! report bugs to the Bioperl bug tracking system to help us keep track
!  the bugs and their resolution.  Bug reports can be submitted via
!  email or the web:
  
!   bioperl-bugs at bio.perl.org
!   http://bio.perl.org/bioperl-bugs/
  
  =head1 AUTHOR - Heikki Lehvaslaiho
--- 66,74 ----
  =head2 Reporting Bugs
  
! Report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
!   http://bugzilla.bioperl.org/
  
  =head1 AUTHOR - Heikki Lehvaslaiho

Index: Result.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/Result.pm,v
retrieving revision 1.9
retrieving revision 1.9.2.1
diff -C2 -d -r1.9 -r1.9.2.1
*** Result.pm	25 Aug 2005 20:10:59 -0000	1.9
--- Result.pm	9 Oct 2005 15:16:20 -0000	1.9.2.1
***************
*** 46,53 ****
  
  report bugs to the Bioperl bug tracking system to help us keep track
!  the bugs and their resolution.  Bug reports can be submitted via
!  email or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 46,52 ----
  
  report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  

Index: MapperI.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/MapperI.pm,v
retrieving revision 1.5
retrieving revision 1.5.8.1
diff -C2 -d -r1.5 -r1.5.8.1
*** MapperI.pm	8 Nov 2002 09:28:24 -0000	1.5
--- MapperI.pm	9 Oct 2005 15:16:20 -0000	1.5.8.1
***************
*** 38,45 ****
  
  report bugs to the Bioperl bug tracking system to help us keep track
!  the bugs and their resolution.  Bug reports can be submitted via
!  email or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 38,44 ----
  
  report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  

Index: Utils.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/Utils.pm,v
retrieving revision 1.11
retrieving revision 1.11.2.1
diff -C2 -d -r1.11 -r1.11.2.1
*** Utils.pm	1 Nov 2004 21:01:40 -0000	1.11
--- Utils.pm	9 Oct 2005 15:16:20 -0000	1.11.2.1
***************
*** 53,60 ****
  
  Report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via email
! or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 53,59 ----
  
  Report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  

Index: Graph.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Coordinate/Graph.pm,v
retrieving revision 1.5
retrieving revision 1.5.2.1
diff -C2 -d -r1.5 -r1.5.2.1
*** Graph.pm	28 May 2004 13:23:24 -0000	1.5
--- Graph.pm	9 Oct 2005 15:16:20 -0000	1.5.2.1
***************
*** 117,124 ****
  
  report bugs to the Bioperl bug tracking system to help us keep track
!  the bugs and their resolution.  Bug reports can be submitted via
!  email or the web:
  
-   bioperl-bugs at bio.perl.org
    http://bugzilla.bioperl.org/
  
--- 117,123 ----
  
  report bugs to the Bioperl bug tracking system to help us keep track
! the bugs and their resolution.  Bug reports can be submitted via the
! web:
  
    http://bugzilla.bioperl.org/
  



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