[Bioperl-guts-l] bioperl-run/Bio/Tools/Run JavaRunner.pm,1.1,1.2

Jason Stajich jason at pub.open-bio.org
Tue Sep 27 08:38:29 EDT 2005


Update of /home/repository/bioperl/bioperl-run/Bio/Tools/Run
In directory pub.open-bio.org:/tmp/cvs-serv22240/Bio/Tools/Run

Modified Files:
	JavaRunner.pm 
Log Message:
add some POD, note that this module is probably incomplete


Index: JavaRunner.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/JavaRunner.pm,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** JavaRunner.pm	1 Mar 2004 10:42:09 -0000	1.1
--- JavaRunner.pm	27 Sep 2005 12:38:26 -0000	1.2
***************
*** 6,9 ****
--- 6,22 ----
  our @ISA=qw(Bio::Tools::Run::AbstractRunner);
  
+ =head1 new
+ 
+  Title   : new
+  Usage   : $runner = Bio::Tools::Run::JavaRunner->new(-jar => $jar)
+  Function: Builds a new Bio::Tools::Run::JavaRunner object
+  Returns : Bio::Tools::Run::JavaRunner
+  Args    : -jar => $path to jarfile
+              OR
+            -class => $classfile name        
+            -min_version => $versionstring 
+ 
+ =cut
+ 
  
  sub _initialize {
***************
*** 26,30 ****
      if(defined $self->jar){
          $program = "-jar ". $self->jar;
!     }elsif(defined $self->class){
          $program = $self->class;
      }else{
--- 39,43 ----
      if(defined $self->jar){
          $program = "-jar ". $self->jar;
!     } elsif(defined $self->class){
          $program = $self->class;
      }else{
***************
*** 43,54 ****
  =head1 NAME
  
! Bio::Tools::Run::JavaRunner
  
  =head1 SYNOPSIS
  
! 
  
  =head1 DESCRIPTION
  
  
  =head1 AUTHOR
--- 56,70 ----
  =head1 NAME
  
! Bio::Tools::Run::JavaRunner - run java programs
  
  =head1 SYNOPSIS
  
!    my $runner = Bio::Tools::Run::JavaRunner->new(-jar => $jar);
!    $runner->run();
  
  =head1 DESCRIPTION
  
+ This module is probably incomplete.  It is intended to be a wrapper
+ for running java programs.
  
  =head1 AUTHOR



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