[Bioperl-guts-l] bioperl-live/Bio/Tools/Run GenericParameters.pm, 1.2, 1.3 ParametersI.pm, 1.2, 1.3 RemoteBlast.pm, 1.26, 1.27 WrapperBase.pm, 1.17, 1.18

Jason Stajich jason at pub.open-bio.org
Tue Sep 27 10:11:03 EDT 2005


Update of /home/repository/bioperl/bioperl-live/Bio/Tools/Run
In directory pub.open-bio.org:/tmp/cvs-serv22945/Run

Modified Files:
	GenericParameters.pm ParametersI.pm RemoteBlast.pm 
	WrapperBase.pm 
Log Message:
standardize POD so that bugzilla is listed and no more email address


Index: RemoteBlast.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Tools/Run/RemoteBlast.pm,v
retrieving revision 1.26
retrieving revision 1.27
diff -C2 -d -r1.26 -r1.27
*** RemoteBlast.pm	27 Sep 2005 13:08:48 -0000	1.26
--- RemoteBlast.pm	27 Sep 2005 14:11:00 -0000	1.27
***************
*** 119,127 ****
  web:
  
!   http://bio.perl.org/bioperl-bugs/
  
  =head1 AUTHOR -  Jason Stajich
  
! Email jason at bioperl.org
  
  =head1 APPENDIX
--- 119,130 ----
  web:
  
!   http://bugzilla.bioperl.org
  
  =head1 AUTHOR -  Jason Stajich
  
! Please do NOT contact me directly about this module.  Please post to
! the bioperl mailing list (L<FEEDBACK>). If you would like to be the
! official maintainer of this module, please volunteer on the list and
! we will make it official in this POD.
  
  =head1 APPENDIX

Index: ParametersI.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Tools/Run/ParametersI.pm,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** ParametersI.pm	7 Dec 2004 13:03:47 -0000	1.2
--- ParametersI.pm	27 Sep 2005 14:11:00 -0000	1.3
***************
*** 1,3 ****
! # 
  #
  # BioPerl module for wrapping runtime parameters
--- 1,3 ----
! # $Id$
  #
  # BioPerl module for wrapping runtime parameters
***************
*** 41,49 ****
  
  Report bugs to the Bioperl bug tracking system to help us keep track
! of the bugs and their resolution. Bug reports can be submitted via
! email or the web:
  
!   bioperl-bugs at bioperl.org
!   http://bioperl.org/bioperl-bugs/
  
  =head1 AUTHOR - Chad Matsalla
--- 41,48 ----
  
  Report bugs to the Bioperl bug tracking system to help us keep track
! of the bugs and their resolution. Bug reports can be submitted via the
! web:
  
!   http://bugzilla.bioperl.org/
  
  =head1 AUTHOR - Chad Matsalla

Index: WrapperBase.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Tools/Run/WrapperBase.pm,v
retrieving revision 1.17
retrieving revision 1.18
diff -C2 -d -r1.17 -r1.18
*** WrapperBase.pm	25 Sep 2005 08:29:52 -0000	1.17
--- WrapperBase.pm	27 Sep 2005 14:11:00 -0000	1.18
***************
*** 52,56 ****
  web:
  
!   http://bioperl.org/bioperl-bugs/
  
  =head1 AUTHOR - Jason Stajich
--- 52,56 ----
  web:
  
!   http://bugzilla.bioperl.org/
  
  =head1 AUTHOR - Jason Stajich

Index: GenericParameters.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Tools/Run/GenericParameters.pm,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** GenericParameters.pm	7 Dec 2004 13:03:47 -0000	1.2
--- GenericParameters.pm	27 Sep 2005 14:11:00 -0000	1.3
***************
*** 1,3 ****
! # 
  #
  # BioPerl module for wrapping runtime parameters
--- 1,3 ----
! # $Id$
  #
  # BioPerl module for wrapping runtime parameters
***************
*** 22,26 ****
  =head1 DESCRIPTION
  
! This is a basic container to hold the parameters used to run a program.
  
  =head1 FEEDBACK
--- 22,28 ----
  =head1 DESCRIPTION
  
! This is a basic container to hold the parameters used to run a
! program.  This module may get incorporated into the more generic
! Bio::Tools::Run framework in bioperl-run distribution.
  
  =head1 FEEDBACK
***************
*** 38,46 ****
  
  Report bugs to the Bioperl bug tracking system to help us keep track
! of the bugs and their resolution. Bug reports can be submitted via
! email or the web:
  
!   bioperl-bugs at bioperl.org
!   http://bioperl.org/bioperl-bugs/
  
  =head1 AUTHOR - Chad Matsalla
--- 40,47 ----
  
  Report bugs to the Bioperl bug tracking system to help us keep track
! of the bugs and their resolution. Bug reports can be submitted via the
! web:
  
!   http://bugzilla.bioperl.org/
  
  =head1 AUTHOR - Chad Matsalla



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