April 2006 Archives by author

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Starting: Sat Apr 1 10:33:44 EDT 2006
Ending: Sat Apr 29 17:43:04 EDT 2006
Messages: 152

• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.94,1.95   Scott Cain
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF bulk_load_gff.PLS, 1.41, 1.42   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/Tools GFF.pm,1.50,1.51   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.127,1.128   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO psl.pm,1.9,1.10   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools RNAMotif.pm,1.2,1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools RNAMotif.pm,1.3,1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools RNAMotif.pm,1.4,1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools RNAMotif.pm,1.5,1.6   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO fasta.pm,1.23,1.24   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools ERPIN.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB NCBIHelper.pm,1.45,1.46   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB WebDBSeqI.pm,1.49,1.50   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.92,1.93   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.93,1.94   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t DB.t,1.59,1.60   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB NCBIHelper.pm, 1.46, 1.47 WebDBSeqI.pm, 1.50, 1.51   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools RNAMotif.pm,1.6,1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools ERPIN.pm,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO FastHitEventBuilder.pm, 1.8, 1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.30, 1.31   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO EventHandlerI.pm, 1.10, 1.11 FastHitEventBuilder.pm, 1.9, 1.10 SearchResultEventBuilder.pm, 1.38, 1.39 blast.pm, 1.95, 1.96   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO excel.pm, NONE, 1.1 table.pm, NONE, 1.1   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/t/data kinases.tsv, NONE, 1.1 kinases.xls, NONE, 1.1   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/t table.t,NONE,1.1   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/t table.t,1.1,1.2   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio/Ontology Ontology.pm,1.14,1.15   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio OntologyIO.pm,1.8,1.9   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio/Ontology OBOEngine.pm, NONE, 1.1 OBOterm.pm, NONE, 1.1 Xref.pm, NONE, 1.1 Ontology.pm, 1.15, 1.16   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO obo.pm,NONE,1.1   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/t obo_parser.t,NONE,1.1   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/t/data so.obo,NONE,1.1   Hilmar Lapp
• [Bioperl-guts-l] bioperl-live/Bio/Tools Genewise.pm,1.20,1.21   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools Genewise.pm,1.21,1.22   Brian Osborne
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip DrawTree.pm, 1.10, 1.11   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Tools RestrictionEnzyme.pm, 1.30, 1.31   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB Fasta.pm,1.42,1.43   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO table.pm, 1.1, 1.2 excel.pm, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live INSTALL,1.43,1.44   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t/data testaln2.fasta,NONE,1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.100,1.101   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB EntrezGene.pm,1.3,1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB CUTG.pm,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/CodonUsage IO.pm,1.5,1.6   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB EntrezGene.pm,1.4,1.5   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB CUTG.pm,1.7,1.8   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/CodonUsage IO.pm,1.6,1.7   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t DBCUTG.t,1.17,1.18   Brian Osborne
• [Bioperl-guts-l] bioperl-live INSTALL.WIN,1.18,1.19   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio SeqUtils.pm,1.23,1.24   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO phylip.pm,1.34,1.35   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t AlignIO.t,1.58,1.59   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t PAML.t,1.19,1.20   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.37,1.38   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t/data codeml315.mlc,NONE,1.1   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo/PAML ModelResult.pm, 1.4, 1.5   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Phylo PAML.pm,1.38,1.39   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run RemoteBlast.pm, 1.29, 1.30   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO SearchResultEventBuilder.pm, 1.37, 1.38 blast.pm, 1.94, 1.95   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Feature.pm, 1.44, 1.45 Glyph.pm, 1.92, 1.93   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor/dbi mysql.pm, 1.65, 1.66   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Generic.pm,1.97,1.98   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature - New directory   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store - New directory   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI - New directory   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-SeqFeature-Store - New directory   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store Cacher.pm, NONE, 1.1 GFF3Loader.pm, NONE, 1.1 bdb.pm, NONE, 1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI Iterator.pm, NONE, 1.1 mysql.pm, NONE, 1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-SeqFeature-Store bp_seqfeature_load.PLS, NONE, 1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature LazyFeature.pm, NONE, 1.1 LazyTableFeature.pm, NONE, 1.1 NormalizedFeatureI.pm, NONE, 1.1 NormalizedTableFeatureI.pm, NONE, 1.1 Store.pm, NONE, 1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.1, 1.2   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature LazyTableFeature.pm, 1.1, 1.2 Store.pm, 1.1, 1.2   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF Feature.pm, 1.72, 1.73 RelSegment.pm, 1.50, 1.51   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.1, 1.2   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Feature.pm, 1.45, 1.46 Glyph.pm, 1.93, 1.94 Panel.pm, 1.111, 1.112   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph dna.pm,1.20,1.21   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Segment.pm, NONE, 1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph dna.pm, 1.21, 1.22 generic.pm, 1.30, 1.31   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, NONE, 1.1 Feature.pm, 1.46, 1.47   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.2, 1.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature LazyFeature.pm, 1.1, 1.2 LazyTableFeature.pm, 1.2, 1.3 Segment.pm, 1.1, 1.2 Store.pm, 1.2, 1.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/t BioGraphics.t,1.16,1.17   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm,1.1,1.2   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature LazyFeature.pm, 1.2, 1.3 Store.pm, 1.3, 1.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.3, 1.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.2, 1.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm,1.4,1.5   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.3, 1.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm,1.5,1.6   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.4, 1.5   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature Store.pm,1.6,1.7   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF/Adaptor berkeleydb.pm, 1.23, 1.24   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.112,1.113   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph dna.pm,1.22,1.23   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph arrow.pm, 1.28, 1.29   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm,1.113,1.114   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store bdb.pm, 1.1, 1.2 Cacher.pm, 1.1, NONE   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.5, 1.6   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-SeqFeature-Store bp_seqfeature_load.PLS, 1.1, 1.2   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature LazyTableFeature.pm, 1.3, 1.4 Store.pm, 1.7, 1.8   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature LazyFeature.pm, 1.3, 1.4 Segment.pm, 1.2, 1.3 Store.pm, 1.8, 1.9 LazyTableFeature.pm, 1.4, NONE   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.4, 1.5   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqFeature.pm,NONE,1.1   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, NONE, 1.1 LazyFeature.pm, 1.4, NONE   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph cds.pm, 1.25, 1.26 translation.pm, 1.22, 1.23   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm,1.2,1.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-SeqFeature-Store bp_seqfeature_load.PLS, 1.2, 1.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Muscle.pm, 1.6, 1.7   Albert Vilella
• [Bioperl-guts-l] [Bug 1980] New: Bio::Tools::Genewise _get_strand problem   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1980] Bio::Tools::Genewise _get_strand problem   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1980] Bio::Tools::Genewise _get_strand problem   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1977] error parsing psl using Bio::SearchIO::psl   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1973] Bio::SearchIO::wise -> Bio::Tools:Genewise   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1928] incomplete example in Bio::Tools::Run::Phylo::Phylip::DrawTree   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1962] RemoteBlast doesn't wait for actual response   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1879] RemoteBlast->retrieve_blast returns bad submission results   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1958] Fasta format alignments removes unknows and shifts sequence.   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1983] New: Paml parser for NSsites parse only first 3 models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1983] Paml parser for NSsites parse only first 3 models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1983] Paml parser for NSsites parse only first 3 models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1983] Paml parser for NSsites parse only first 3 models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1984] New: 2 new SimpleAlign methods: set_new_reference & uniq_seq   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1984] 2 new SimpleAlign methods: set_new_reference & uniq_seq   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1983] Paml parser for NSsites parse only first 3 models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1983] Paml parser for NSsites parse only first 3 models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1983] Paml parser for NSsites parse only first 3 models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1985] New: PSI-BLAST parsing fails on Windows   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1985] PSI-BLAST parsing fails on Windows   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1405] Enhancement to Bio::DB::GenBank to allow subsequence retrieval   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1405] Enhancement to Bio::DB::GenBank to allow subsequence retrieval   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1405] Enhancement to Bio::DB::GenBank to allow subsequence retrieval   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1405] Enhancement to Bio::DB::GenBank to allow subsequence retrieval   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1983] Paml parser for NSsites parse only first 3 models   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] New: SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1985] PSI-BLAST parsing fails on Windows   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1985] PSI-BLAST parsing fails on Windows   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1985] PSI-BLAST parsing fails on Windows   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1988] New: SearchIO::blast parses bit score incorrectly when score is reported in scientific notation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1988] SearchIO::blast parses bit score incorrectly when score is reported in scientific notation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1988] SearchIO::blast parses bit score incorrectly when score is reported in scientific notation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1988] SearchIO::blast parses bit score incorrectly when score is reported in scientific notation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1988] SearchIO::blast parses bit score incorrectly when score is reported in scientific notation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1989] New: GI identifier missing when using Bio::Index::GenBank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1986] SearchIO::blast mixes up hits where duplicate accessions are present   bugzilla-daemon at newportal.open-bio.org

Last message date: Sat Apr 29 17:43:04 EDT 2006
Archived on: Sat Apr 29 17:43:09 EDT 2006

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