[Bioperl-guts-l] [Bug 2071] New: Bio::FeatureIO::gff does not correctly write gff3 Target strand
bugzilla-daemon at newportal.open-bio.org
bugzilla-daemon at newportal.open-bio.org
Fri Aug 11 17:08:29 EDT 2006
http://bugzilla.open-bio.org/show_bug.cgi?id=2071
Summary: Bio::FeatureIO::gff does not correctly write gff3 Target
strand
Product: Bioperl
Version: main-trunk
Platform: PC
OS/Version: Linux
Status: NEW
Severity: normal
Priority: P2
Component: Core Components
AssignedTo: bioperl-guts-l at bioperl.org
ReportedBy: rmb32 at cornell.edu
In Bio::FeatureIO::gff::_write_feature_3, it expects Bio::Annotation::Target
objects to return '+' or '-' from their strand() accessor. This isn't correct,
they return 1, 0, or -1, just like the rest of bioperl.
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