[Bioperl-guts-l] [Bug 2071] New: Bio::FeatureIO::gff does not correctly write gff3 Target strand

bugzilla-daemon at newportal.open-bio.org bugzilla-daemon at newportal.open-bio.org
Fri Aug 11 17:08:29 EDT 2006


http://bugzilla.open-bio.org/show_bug.cgi?id=2071

           Summary: Bio::FeatureIO::gff does not correctly write gff3 Target
                    strand
           Product: Bioperl
           Version: main-trunk
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Core Components
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: rmb32 at cornell.edu


In Bio::FeatureIO::gff::_write_feature_3, it expects Bio::Annotation::Target
objects to return '+' or '-' from their strand() accessor.  This isn't correct,
they return 1, 0, or -1, just like the rest of bioperl.


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