[Bioperl-guts-l] bioperl-ext README,1.8,1.9

Christopher John Fields cjfields at dev.open-bio.org
Wed Aug 30 14:08:47 EDT 2006


Update of /home/repository/bioperl/bioperl-ext
In directory dev.open-bio.org:/tmp/cvs-serv3812

Modified Files:
	README 
Log Message:
added bit about VERSION issues

Index: README
===================================================================
RCS file: /home/repository/bioperl/bioperl-ext/README,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** README	29 Aug 2006 16:39:59 -0000	1.8
--- README	30 Aug 2006 18:08:44 -0000	1.9
***************
*** 95,96 ****
--- 95,121 ----
   place (see above regarding "os.h" and "config.h").
  
+  Additional problems may occur that have been associated with the VERSION
+  number that Inline::C uses.  Normally, this pops up as an Inline error:
+  
+  ------------------------------------------------------------------------
+  The extension 'Bio::SeqIO::staden::read' is not properly installed in path:
+   '/usr/lib/perl5/site_perl/5.8.0'
+ 
+  If this is a CPAN/distributed module, you may need to reinstall it on your
+  system.
+ 
+  To allow Inline to compile the module in a temporary cache, simply remove the
+  Inline config option 'VERSION=' from the Bio::SeqIO::staden::read module.
+  ------------------------------------------------------------------------
+  
+  To get around this, either quote out or remove the indicated line from your
+  local Bio/SeqIO/staden/read.pm file after installation:
+  
+  use Inline (C => 'DATA',
+ 		    VERSION => '1.51', # <--- this line
+ 		    NAME => 'Bio::SeqIO::staden::read',
+ 		    LIBS => "-L/usr/local/lib -lread -lz", # leave these as double quotes - necessary for Makefile.PL function
+ 		    INC  => "-I/usr/local/include/io_lib", # leave these as double quotes - necessary for Makefile.PL function
+ 		   );
+            
+         
\ No newline at end of file



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