[Bioperl-guts-l] bioperl-ext README,1.8,1.9
Christopher John Fields
cjfields at dev.open-bio.org
Wed Aug 30 14:08:47 EDT 2006
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Update of /home/repository/bioperl/bioperl-ext
In directory dev.open-bio.org:/tmp/cvs-serv3812
Modified Files:
README
Log Message:
added bit about VERSION issues
Index: README
===================================================================
RCS file: /home/repository/bioperl/bioperl-ext/README,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** README 29 Aug 2006 16:39:59 -0000 1.8
--- README 30 Aug 2006 18:08:44 -0000 1.9
***************
*** 95,96 ****
--- 95,121 ----
place (see above regarding "os.h" and "config.h").
+ Additional problems may occur that have been associated with the VERSION
+ number that Inline::C uses. Normally, this pops up as an Inline error:
+
+ ------------------------------------------------------------------------
+ The extension 'Bio::SeqIO::staden::read' is not properly installed in path:
+ '/usr/lib/perl5/site_perl/5.8.0'
+
+ If this is a CPAN/distributed module, you may need to reinstall it on your
+ system.
+
+ To allow Inline to compile the module in a temporary cache, simply remove the
+ Inline config option 'VERSION=' from the Bio::SeqIO::staden::read module.
+ ------------------------------------------------------------------------
+
+ To get around this, either quote out or remove the indicated line from your
+ local Bio/SeqIO/staden/read.pm file after installation:
+
+ use Inline (C => 'DATA',
+ VERSION => '1.51', # <--- this line
+ NAME => 'Bio::SeqIO::staden::read',
+ LIBS => "-L/usr/local/lib -lread -lz", # leave these as double quotes - necessary for Makefile.PL function
+ INC => "-I/usr/local/include/io_lib", # leave these as double quotes - necessary for Makefile.PL function
+ );
+
+
\ No newline at end of file
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