[Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneBlast.pm, 1.67, 1.68

Senduran Balasubramaniam sendu at dev.open-bio.org
Thu Dec 14 09:08:10 EST 2006


Update of /home/repository/bioperl/bioperl-live/Bio/Tools/Run
In directory dev.open-bio.org:/tmp/cvs-serv13237/Bio/Tools/Run

Modified Files:
	StandAloneBlast.pm 
Log Message:
clarified POD

Index: StandAloneBlast.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Tools/Run/StandAloneBlast.pm,v
retrieving revision 1.67
retrieving revision 1.68
diff -C2 -d -r1.67 -r1.68
*** StandAloneBlast.pm	4 Oct 2006 05:52:06 -0000	1.67
--- StandAloneBlast.pm	14 Dec 2006 14:08:08 -0000	1.68
***************
*** 140,144 ****
  
  In addition, sequence input may be in the form of either a Bio::Seq
! object or or an array of Bio::Seq objects, e.g.:
  
    $input = Bio::Seq->new(-id => "test query",
--- 140,144 ----
  
  In addition, sequence input may be in the form of either a Bio::Seq
! object or (a reference to) an array of Bio::Seq objects, e.g.:
  
    $input = Bio::Seq->new(-id => "test query",
***************
*** 544,548 ****
  	      $seq_array_ref = \@seq_array;  
           # where @seq_array is an array of Bio::Seq objects
! 	      $blast_report = $factory->blastall(\@seq_array);
   Returns : Reference to a Blast object or BPlite object 
             containing the blast report.
--- 544,548 ----
  	      $seq_array_ref = \@seq_array;  
           # where @seq_array is an array of Bio::Seq objects
! 	      $blast_report = $factory->blastall($seq_array_ref);
   Returns : Reference to a Blast object or BPlite object 
             containing the blast report.



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