[Bioperl-guts-l] bioperl-run/t/data species_tree_njtree.nh, NONE, 1.1

Albert Vilella avilella at dev.open-bio.org
Fri Dec 15 13:10:31 EST 2006


Update of /home/repository/bioperl/bioperl-run/t/data
In directory dev.open-bio.org:/tmp/cvs-serv20550

Added Files:
	species_tree_njtree.nh 
Log Message:
adding an example species_tree file for njtree best


--- NEW FILE: species_tree_njtree.nh ---
((ORYSA*-4530.rice,ARATH*-3702)Magnoliophyta-3398,(SCHPO*-4896.S_pombe,YEAST*-4932)Ascomycota-4890,((((((((((((HUMAN*-9606,PANTR*-9598.chimpanzee)Homo/Pan/Gorilla-207598,MACMU*-9544.monkey)Catarrhini-9526,OTOGA-*30611.galago)Primates-9443,((MOUSE*-10090,RAT*-10116)Murinae-39107,RABIT-9986)Glires-314147)Euarchontoglires-314146,((BOVIN*-9913.cow,PIG-*9823)Cetartiodactyla-91561,(CANFA*-9615.dog,FELCA-*9685.cat)Carnivora-33554,SORAR-*42254.shrew,MYOLU-*59463.bat)Laurasiatheria-314145,(ECHTE-9371.tenrec,LOXAF-9785.elephant)Afrotheria-311790,DASNO-9361.armadillo)Eutheria-9347,MONDO*-13616.opossum)Theria-32525,ORNAN-*9258.platypus)Mammalia-40674,CHICK*-9031)Amniota-32524,XENTR*-8364.frog)Tetrapoda-32523,(BRARE*-7955.zebrafish,((TETNG*-99883.pufferfish,FUGRU*-31033.pufferfish)Tetraodontidae-31031,(GASAC-*69293.stickleback,ORYLA-*8090.ricefish)Smegmamorpha-129949)Percomorpha-32485)Clupeocephala-186625)Euteleostomi-117571,(CIOIN*-7719,CIOSA-*51511)Ciona-7718)Chordata-7711,(((DROME*-72!
 27.fly,DROPS*-7237.fly)Sophophora-32341,(AEDAE-*7159.mosquito,ANOGA*-7165.mosquito)Culicidae-7157)Diptera-7147,APIME-*7460.honeybee)Endopterygota-33392,SCHMA*-6183.fluke,(CAEEL*-6239.worm,CAEBR*-6238.worm,CAERE*-31234.worm)Caenorhabditis-6237)Bilateria-33213)Eukaryota-2759;



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