[Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy SLAC.pm, 1.1, 1.2

Albert Vilella avilella at dev.open-bio.org
Fri Dec 15 13:57:49 EST 2006


Update of /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Hyphy
In directory dev.open-bio.org:/tmp/cvs-serv21057

Modified Files:
	SLAC.pm 
Log Message:
now it should work parsing the output


Index: SLAC.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** SLAC.pm	15 Dec 2006 18:55:39 -0000	1.1
--- SLAC.pm	15 Dec 2006 18:57:47 -0000	1.2
***************
*** 318,322 ****
         my $outfile = $self->outfile_name;
         eval {
! 	   open(OUTFILE, "$tempdir/$outfile") or $self->throw("cannot open $outfile for reading");
             my $readed_header = 0;
             my @elems;
--- 318,322 ----
         my $outfile = $self->outfile_name;
         eval {
! 	   open(OUTFILE, "$outfile") or $self->throw("cannot open $outfile for reading");
             my $readed_header = 0;
             my @elems;



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