December 2006 Archives by date

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Starting: Fri Dec 1 06:33:52 EST 2006
Ending: Sun Dec 31 14:36:40 EST 2006
Messages: 210

• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm,1.17,1.18   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm, 1.5.2.8, 1.5.2.9   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy list.pm,1.8,1.9   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio Species.pm,1.46,1.47   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.82, 1.83   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.78.4.5, 1.78.4.6   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.78.4.6, 1.78.4.7   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.83, 1.84   Lincoln Stein
• [Bioperl-guts-l] [Bug 2152] DBSOURCE parsing: many databases not separated from primary_id   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2156] New: Bio::DB::REBASE module and t/DBREBASE.t test script   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2156] Bio::DB::REBASE module and t/DBREBASE.t test script   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2156] Bio::DB::REBASE module and t/DBREBASE.t test script   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t GuessSeqFormat.t,1.9,1.10   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t GuessSeqFormat.t,1.8.6.1,1.8.6.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Makefile.PL,1.94.4.8,1.94.4.9   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm,1.18,1.19   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm, 1.5.2.9, 1.5.2.10   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Build.PL,1.12,1.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph ternary_plot.pm, NONE, 1.1   Lincoln Stein
• [Bioperl-guts-l] [Bug 2159] New: parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2113] XEMBL-related URLs in Bio::DB::XEMBL and Bio::DB::XEMBLServices no longer work   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2113] XEMBL-related URLs in Bio::DB::XEMBL and Bio::DB::XEMBLServices no longer work   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-db Build.PL,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2160] New: Bio/Tools/SeqStats.pm ignores the alphabet defined by the user   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm, 1.5.2.10, 1.5.2.11   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm,1.19,1.20   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2160] Bio/Tools/SeqStats.pm ignores the alphabet defined by the user   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2160] Bio/Tools/SeqStats.pm ignores the alphabet defined by the user   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/t Tmhmm.t,1.7,1.8   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio SeqIO.pm,1.95,1.96   Christopher John Fields
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm,1.20,1.21   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm, 1.5.2.11, 1.5.2.12   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Build.PL,1.5.2.5,1.5.2.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Build.PL,1.13,1.14   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root Version.pm,1.15,1.16   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Root Version.pm,1.9.4.5,1.9.4.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db Build.PL,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network Build.PL,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run Build.PL,1.1,1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2159] parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run Makefile.PL,1.22,1.23   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network Makefile.PL,1.12,1.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db Makefile.PL,1.13,1.14   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db ModuleBuildBioperl.pm,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network ModuleBuildBioperl.pm,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run ModuleBuildBioperl.pm,1.2,1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm,1.21,1.22   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm, 1.5.2.12, 1.5.2.13   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t/data biofpc.fpc,1.1.2.1,1.1.2.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t PhysicalMap.t,1.2.4.3,1.2.4.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/MapIO fpc.pm,1.6.4.2,1.6.4.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/DB/Taxonomy list.pm, 1.1.4.4, 1.1.4.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio Species.pm, 1.35.4.5, 1.35.4.6 SeqIO.pm, 1.92.4.4, 1.92.4.5   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2159] parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2159] parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2159] parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2159] parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2159] parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2159] parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2159] parsing xml blast results hit-description   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.40,1.41   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.41,1.42   Christopher John Fields
• [Bioperl-guts-l] [Bug 2153] Bundle::BioPerl doesn't install all dependencies on the first pass   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm,1.22,1.23   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm, 1.5.2.13, 1.5.2.14   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db ModuleBuildBioperl.pm,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network ModuleBuildBioperl.pm,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run ModuleBuildBioperl.pm,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db INSTALL,1.15,1.16 Changes,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network INSTALL,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network Changes,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network INSTALL,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db INSTALL,1.16,1.17   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network INSTALL,1.5,1.6   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run INSTALL,NONE,1.1 README,1.9,1.10   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run Changes,1.6,1.7   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO proda.pm,NONE,1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO proda.pm,1.1,1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Proda.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-live ModuleBuildBioperl.pm,1.23,1.24   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-db ModuleBuildBioperl.pm,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-network ModuleBuildBioperl.pm,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run ModuleBuildBioperl.pm,1.4,1.5   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live INSTALL.WIN,1.24,1.25   Christopher John Fields
• [Bioperl-guts-l] bioperl-live INSTALL,1.60,1.61   Christopher John Fields
• [Bioperl-guts-l] bioperl-live DEPENDENCIES,1.3,1.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live INSTALL, 1.47.4.7, 1.47.4.8 INSTALL.WIN, 1.20.4.4, 1.20.4.5 DEPENDENCIES, 1.1.2.3, 1.1.2.4   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Probalign.pm, 1.2, 1.3   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Proda.pm, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] [Bug 2162] New: bits socre error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2162] bits socre error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2156] Bio::DB::REBASE module and t/DBREBASE.t test script   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2162] bits socre error   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t StandAloneBlast.t,1.28,1.29   Brian Osborne
• [Bioperl-guts-l] [Bug 2135] Problems with ambiguity restriction sites and Bio::Tools::RestrictionEnzyme   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2136] &aa_to_dna_aln in Bio::Align::Utilities returns gaps when it shouldn't   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2136] &aa_to_dna_aln in Bio::Align::Utilities returns gaps when it shouldn't   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2136] &aa_to_dna_aln in Bio::Align::Utilities returns gaps when it shouldn't   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live Build.PL,1.14,1.15   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live Build.PL,1.15,1.16   Senduran Balasubramaniam
• [Bioperl-guts-l] [Bug 2136] &aa_to_dna_aln in Bio::Align::Utilities returns gaps when it shouldn't   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2136] &aa_to_dna_aln in Bio::Align::Utilities returns gaps when it shouldn't   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tree AlleleNode.pm, 1.15, 1.16 Node.pm, 1.53, 1.54 NodeI.pm, 1.36, 1.37   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Taxonomy Taxon.pm,1.8,1.9   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t/data sbay_c127.fas,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SeqFeatureI.pm,1.69,1.70   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SeqFeature.t,1.44,1.45   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.120,1.121   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SimpleAlign.t,1.46,1.47   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run FootPrinter.pm, 1.16, 1.17   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SeqFeature.t,1.45,1.46   Jason Stajich
• [Bioperl-guts-l] bioperl-live/t SeqFeature.t,1.46,1.47   Christopher John Fields
• [Bioperl-guts-l] [Bug 2163] New: hit->evalue is not numeric, e.g., $hit->evalue=0.001, #ended with comma ', '   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2163] hit->evalue is not numeric, e.g., $hit->evalue=0.001, #ended with comma ', '   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run FootPrinter.pm, 1.17, 1.18   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools FootPrinter.pm,1.11,1.12   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run FootPrinter.pm, 1.18, 1.19   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Clustalw.pm, 1.48, 1.49   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/scripts/Bio-DB-GFF fast_load_gff.PLS, 1.31, 1.32   Scott Cain
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Clustalw.pm, 1.49, 1.50   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t Clustalw.t,1.34,1.35   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Tools Infernal.pm,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools Infernal.pm,1.1,1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blast.pm,1.109,1.110   Dave Messina
• [Bioperl-guts-l] [Bug 2165] New: Bio::SeqIO does not write correct taxonomy data in SwissProt format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2165] Bio::SeqIO does not write correct taxonomy data in SwissProt format   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Tools/Run StandAloneBlast.pm, 1.67, 1.68   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy - New directory   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Njtree - New directory   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Njtree Best.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t/data cysprot.stockholm,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t QuickTree.t,NONE,1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo QuickTree.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph image.pm, 1.4, 1.5 xyplot.pm, 1.28, 1.29   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.121,1.122   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t SimpleAlign.t,1.47,1.48   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Njtree Best.pm, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Njtree Best.pm, 1.2, 1.3   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/t/data njtree_aln2.nucl.mfa,NONE,1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t/data species_tree_njtree.nh, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run Njtree.t,NONE,1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Njtree Best.pm, 1.3, 1.4   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy SLAC.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy SLAC.pm, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t Hyphy.t,NONE,1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Alignment Proda.pm, 1.2, 1.3   Jason Stajich
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phast - New directory   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phast PhastCons.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy SLAC.pm, 1.2, 1.3   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy Modeltest.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy REL.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy FEL.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] [Bug 2166] New: SearchIO::blastxml broken with new blast output and multiple queries   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2166] SearchIO::blastxml broken with new blast output and multiple queries   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2166] SearchIO::blastxml broken with new blast output and multiple queries   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2166] SearchIO::blastxml broken with new blast output and multiple queries   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy Base.pm, NONE, 1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy FEL.pm, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy Modeltest.pm, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy REL.pm, 1.1, 1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy SLAC.pm, 1.3, 1.4   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t Hyphy.t,1.1,1.2   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t/data hyphy1.fasta,NONE,1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-run/t/data hyphy1.tree,NONE,1.1   Albert Vilella
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeFunctionsI.pm, 1.30, 1.31   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/Bio/TreeIO newick.pm,1.39,1.40   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio LocatableSeq.pm,1.41,1.42   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio PrimarySeq.pm,1.99,1.100   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/AlignIO fasta.pm,1.29,1.30   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Align Utilities.pm,1.22,1.23   Jason Stajich
• [Bioperl-guts-l] [Bug 2167] New: genbank: unusual ORGANISM content breaks parsing   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2167] genbank: unusual ORGANISM content breaks parsing   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] [Bug 2168] New: "no data for midline" exception thrown   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.22, 1.23   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqFeature.pm,1.11,1.12   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio SimpleAlign.pm,1.122,1.123   Stefan Kirov
• [Bioperl-guts-l] bioperl-live/Bio/DB EUtilities.pm, 1.36, 1.37 GenericWebDBI.pm, 1.7, 1.8   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.84, 1.85   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph stackedplot.pm, NONE, 1.1 xyplot.pm, 1.29, 1.30   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB BioFetch.pm,1.31,1.32   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tree TreeFunctionsI.pm, 1.31, 1.32   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phast PhastCons.pm, 1.1, 1.2   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phast PhyloFit.pm, NONE, 1.1   Senduran Balasubramaniam
• [Bioperl-guts-l] bioperl-live/t BioFetch_DB.t,1.13,1.14   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB BioFetch.pm,1.32,1.33   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.102,1.103   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph stackedplot.pm, 1.1, 1.2 xyplot.pm, 1.30, 1.31   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph dna.pm, 1.28, 1.29 stackedplot.pm, 1.2, 1.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/XML - New directory   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/XML BlastHandler.pm, NONE, 1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.42,1.43   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.43,1.44   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/XML BlastHandler.pm, 1.1, 1.2   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/XML BlastHandler.pm, 1.2, 1.3   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.44,1.45   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO/XML BlastHandler.pm, 1.3, 1.4   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.103,1.104   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t/data newblast.xml,NONE,1.1   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.104,1.105   Christopher John Fields
• [Bioperl-guts-l] [Bug 2168] "no data for midline" exception thrown   bugzilla-daemon at portal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t SearchIO.t,1.105,1.106   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Tools CodonTable.pm,1.38,1.39   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.159,1.160   Christopher John Fields
• [Bioperl-guts-l] [Bug 2167] genbank: unusual ORGANISM content breaks parsing   bugzilla-daemon at portal.open-bio.org

Last message date: Sun Dec 31 14:36:40 EST 2006
Archived on: Sun Dec 31 14:36:42 EST 2006

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