[Bioperl-guts-l] bioperl-run/Bio/Tools/Run Mdust.pm,1.6,1.7

Torsten Seemann tseemann at pub.open-bio.org
Thu Jan 5 22:40:14 EST 2006


Update of /home/repository/bioperl/bioperl-run/Bio/Tools/Run
In directory pub.open-bio.org:/tmp/cvs-serv20397

Modified Files:
	Mdust.pm 
Log Message:
POD cleanup.


Index: Mdust.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Mdust.pm,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** Mdust.pm	3 Oct 2003 17:55:45 -0000	1.6
--- Mdust.pm	6 Jan 2006 03:40:12 -0000	1.7
***************
*** 24,47 ****
  =head1 DESCRIPTION
  
! Perl wrapper for the nucleic acid complexity filtering program mdust as 
! available from TIGR (http://www.tigr.org/tdb/tgi/software/).  Takes a 
! bioperl primary seq object of type DNA as input. Returns a Bio::Seq 
! object with the low-complexity regions changed to Ns OR a 
  Bio::Seq::RichSeq object with the low-complexity regions identified as 
! a SeqFeature::Generic with primary tag = 'Excluded'.
  
  This module uses the environment variable MDUSTDIR to find the mdust 
! program. Set MDUSTDIR to the directory containing the mdust binary 
! (example: if mdust is installed as /usr/local/bin/mdust, set MDUSTDIR 
! to '/usr/local/bin').
! 
! 
! =head2 EXPORT
! 
! None
  
  =head1 SEE ALSO
  
! L<mdust>, L<perl>.
  
  =head1 FEEDBACK
--- 24,45 ----
  =head1 DESCRIPTION
  
! Perl wrapper for the nucleic acid complexity filtering program B<mdust> as 
! available from TIGR via L<http://www.tigr.org/tdb/tgi/software/>.  Takes a 
! Bio::PrimarySeq object of type DNA as input. Returns a Bio::Seq 
! object with the low-complexity regions changed to Ns, or a 
  Bio::Seq::RichSeq object with the low-complexity regions identified as 
! a Bio::SeqFeature::Generic with primary tag = 'Excluded'.
  
  This module uses the environment variable MDUSTDIR to find the mdust 
! program. Set MDUSTDIR to the directory containing the mdust binary.
! For example, if mdust is installed as I</usr/local/bin/mdust>, set MDUSTDIR 
! to I</usr/local/bin>.
  
  =head1 SEE ALSO
  
! L<mdust>, 
! L<Bio::PrimarySeq>, 
! L<Bio::Seq::RichSeq>, 
! L<Bio::SeqFeature::Generic>
  
  =head1 FEEDBACK
***************
*** 67,74 ****
  
  Donald Jackson (donald.jackson at bms.com)
- 
- =head1 CONTRIBUTORS
- 
- Additional contributors names and emails here
  
  =head1 APPENDIX
--- 65,68 ----



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