[Bioperl-guts-l] bioperl-live/Bio AlignIO.pm,1.41,1.42

Christopher John Fields cjfields at dev.open-bio.org
Mon Jun 5 11:08:38 EDT 2006


Update of /home/repository/bioperl/bioperl-live/Bio
In directory dev.open-bio.org:/tmp/cvs-serv23919/Bio

Modified Files:
	AlignIO.pm 
Log Message:
Forgot to commit this; added metafasta to _guess_format

Index: AlignIO.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/AlignIO.pm,v
retrieving revision 1.41
retrieving revision 1.42
diff -C2 -d -r1.41 -r1.42
*** AlignIO.pm	17 Mar 2006 00:13:11 -0000	1.41
--- AlignIO.pm	5 Jun 2006 15:08:36 -0000	1.42
***************
*** 458,461 ****
--- 458,462 ----
     return 'clustalw' if /\.aln$/i;
     return 'emboss'   if /\.(water|needle)$/i;
+    return 'metafasta'if /\.metafasta$/;
     return 'fasta'    if /\.(fasta|fast|seq|fa|fsa|nt|aa)$/i;
     return 'maf'      if /\.maf/i;



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