May 2006 Archives by date

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Starting: Mon May 1 12:25:14 EDT 2006
Ending: Wed May 31 23:13:09 EDT 2006
Messages: 188

• [Bioperl-guts-l] [Bug 1990] New: patch for SAX2 parsing in SearchIO::blastxml using XML::SAX   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1990] patch for SAX2 parsing in SearchIO::blastxml using XML::SAX   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1990] patch for SAX2 parsing in SearchIO::blastxml using XML::SAX   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Location Split.pm,1.40,1.41   Jason Stajich
• [Bioperl-guts-l] [Bug 1991] New: Bio::Align::DNAStatistics requires sequence in uppercase, but doesn't always do a "uc"   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB NCBIHelper.pm, 1.47, 1.48 WebDBSeqI.pm, 1.51, 1.52   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t DB.t,1.60,1.61   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB GenBank.pm, 1.54, 1.55 NCBIHelper.pm, 1.48, 1.49 WebDBSeqI.pm, 1.52, 1.53   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t DB.t,1.61,1.62   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio RangeI.pm,1.40,1.41   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio RangeI.pm,1.41,1.42   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Align DNAStatistics.pm, 1.26, 1.27   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t/data hs_owlmonkey.aln,1.1,1.2   Heikki Lehvaslaiho
• [Bioperl-guts-l] bioperl-live/t/data insulin.water,1.1,1.2   Heikki Lehvaslaiho
• [Bioperl-guts-l] [Bug 1991] Bio::Align::DNAStatistics requires sequence in uppercase, but doesn't always do a "uc"   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t swiss.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-live/t Range.t,1.9,1.10   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB WebDBSeqI.pm,1.53,1.54   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB GenBank.pm, 1.55, 1.56 GenPept.pm, 1.28, 1.29 NCBIHelper.pm, 1.49, 1.50   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t DB.t,1.62,1.63   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/SeqFeature Generic.pm,1.98,1.99   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/DB/GFF Feature.pm,1.73,1.74   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio RangeI.pm,1.42,1.43   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.74, 1.75   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.75, 1.76   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.95,1.96   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph cds.pm, 1.26, 1.27 translation.pm, 1.23, 1.24   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Panel.pm, 1.114, 1.115 Util.pm, 1.3, 1.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.128,1.129   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/t DB.t,1.63,1.64   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB NCBIHelper.pm,1.50,1.51   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB GenBank.pm,1.56,1.57   Christopher John Fields
• [Bioperl-guts-l] [Bug 1993] New: Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1993] Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1993] Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1993] Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1993] Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.129,1.130   Christopher John Fields
• [Bioperl-guts-l] [Bug 1993] Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1993] Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1405] Enhancement to Bio::DB::GenBank to allow subsequence retrieval   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1994] New: SearchIO can't parse blast output file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1994] SearchIO can't parse blast output file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1994] SearchIO can't parse blast output file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1994] SearchIO can't parse blast output file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1994] SearchIO can't parse blast output file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.1, 1.2 Store.pm, 1.9, 1.10   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqFeature.pm,1.1,1.2   Lincoln Stein
• [Bioperl-guts-l] [Bug 1985] PSI-BLAST parsing fails on Windows   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1988] SearchIO::blast parses bit score incorrectly when score is reported in scientific notation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/examples/tools run_primer3.pl, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Index EMBL.pm, 1.27, 1.28 Fasta.pm, 1.29, 1.30 GenBank.pm, 1.16, 1.17 Qual.pm, 1.3, 1.4 SwissPfam.pm, 1.19, 1.20   Brian Osborne
• [Bioperl-guts-l] [Bug 1998] New: Bio::Map::Marker incomplete implementation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1998] Bio::Map::Marker incomplete implementation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1945] tblastn reports the wrong frame and hit position   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1954] SeqIO::game does not write or read <computational_analysis> elements   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1990] patch for SAX2 parsing in SearchIO::blastxml using XML::SAX   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1829] -ve xyplot.pm - gff data must be in order   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1830] strange dashes on the negative axis when using xyplot   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1539] Fasta.pm cannot be told to read sequence ID as accession number   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1957] Add some tests for fpc.pm to t/MapIO.t   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Index GenBank.pm,1.17,1.18   Jason Stajich
• [Bioperl-guts-l] bioperl-live/Bio/Index AbstractSeq.pm,1.18,1.19   Jason Stajich
• [Bioperl-guts-l] [Bug 1989] GI identifier missing when using Bio::Index::GenBank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1955] Add Bio::AnnotatableI inheretance to Bio::Map::SimpleMap   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1993] Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1993] Changes to Bio:::SeqIO::genbank   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.29,1.30   Christopher John Fields
• [Bioperl-guts-l] [Bug 1990] patch for SAX2 parsing in SearchIO::blastxml using XML::SAX   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SearchIO blastxml.pm,1.30,1.31   Christopher John Fields
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1953] Inconsistency between Bio::Factory::FTLocationFactory->from_string and Bio::Location::Split->to_FTstring   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqFeature.pm,1.2,1.3   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.6, 1.7   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph xyplot.pm, 1.21, 1.22   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.2, 1.3 Store.pm, 1.10, 1.11   Lincoln Stein
• [Bioperl-guts-l] [Bug 1830] strange dashes on the negative axis when using xyplot   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.76, 1.77   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.3, 1.4   Lincoln Stein
• [Bioperl-guts-l] [Bug 843] _readline() in SeqIO.pm   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Ontology DocumentRegistry.pm, 1.8, 1.9   Scott Cain
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqFeature.pm,1.3,1.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.5, 1.6   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.4, 1.5 NormalizedFeatureI.pm, 1.1, 1.2 NormalizedTableFeatureI.pm, 1.1, 1.2 Store.pm, 1.11, 1.12   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Ontology Xref.pm,1.1,NONE   Sohel Merchant
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.7, 1.8   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.6, 1.7   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-SeqFeature-Store bp_seqfeature_load.PLS, 1.3, 1.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.8, 1.9   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.5, 1.6   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Ontology Term.pm,1.26,1.27   Sohel Merchant
• [Bioperl-guts-l] bioperl-live/Bio/Ontology SimpleGOEngine.pm, 1.31, 1.32   Sohel Merchant
• [Bioperl-guts-l] bioperl-live/Bio/Ontology OBOterm.pm,1.1,1.2   Sohel Merchant
• [Bioperl-guts-l] bioperl-live/Bio/Ontology OBOEngine.pm,1.1,1.2   Sohel Merchant
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO simplehierarchy.pm, 1.12, 1.13   Sohel Merchant
• [Bioperl-guts-l] bioperl-live/Bio/OntologyIO dagflat.pm,1.23,1.24   Sohel Merchant
• [Bioperl-guts-l] [Bug 1539] Fasta.pm cannot be told to read sequence ID as accession number   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1915] Tranditional bootstrap in newick format tree not accesible   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1924] scansite   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1926] Missing sections in Pdoc HTML   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2000] New: AlignIO clustal/fasta parsing   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1924] scansite   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2000] AlignIO clustal/fasta parsing   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2000] AlignIO clustal/fasta parsing   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2000] AlignIO clustal/fasta parsing   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.130,1.131   Jason Stajich
• [Bioperl-guts-l] [Bug 2001] New: RemoteBlast does not return HTML reports properly   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.96,1.97   Scott Cain
• [Bioperl-guts-l] [Bug 2001] RemoteBlast does not return HTML reports properly   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2001] RemoteBlast does not return HTML reports properly   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2002] New: Infinite recursive loop in Unflattener.pm   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2003] New: swiss.pm doesn't parse sequence version out of swissprot files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2003] swiss.pm doesn't parse sequence version out of swissprot files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2003] swiss.pm doesn't parse sequence version out of swissprot files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2004] New: swiss.pm parsing error   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2004] swiss.pm parsing error   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 1998] Bio::Map::Marker incomplete implementation   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Graphics Glyph.pm,1.97,1.98   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.9, 1.10   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.6, 1.7 Segment.pm, 1.3, 1.4 Store.pm, 1.12, 1.13   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph gene.pm, NONE, 1.1 generic.pm, 1.31, 1.32 transcript.pm, 1.19, 1.20 transcript2.pm, 1.24, 1.25   Lincoln Stein
• [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline Manager.pm, 1.10, 1.11   olivier at dev.open-bio.org
• [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline Transformer.pm, 1.12, 1.13   olivier at dev.open-bio.org
• [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline/Runnable Blast.pm, 1.20, 1.21   olivier at dev.open-bio.org
• [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline/Runnable Blat.pm, 1.2, 1.3   olivier at dev.open-bio.org
• [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline/Runnable Phylip.pm, 1.3, 1.4   olivier at dev.open-bio.org
• [Bioperl-guts-l] bioperl-pipeline/Bio/Pipeline/Runnable ProteinAnnotation.pm, 1.2, 1.3   olivier at dev.open-bio.org
• [Bioperl-guts-l] bioperl-network/t - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-network/t/data - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO - New directory   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network Edge.pm, NONE, 1.1 IO.pm, NONE, 1.1 Interaction.pm, NONE, 1.1 Node.pm, NONE, 1.1 ProteinNet.pm, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-network AUTHORS, NONE, 1.1 INSTALL, NONE, 1.1 MANIFEST, NONE, 1.1 Makefile.PL, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network/IO dip_tab.pm, NONE, 1.1 psi_xml.pm, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-network/t Edge.t, NONE, 1.1 IO_dip_tab.t, NONE, 1.1 IO_psi_xml.t, NONE, 1.1 Interaction.t, NONE, 1.1 Node.t, NONE, 1.1 ProteinNet.t, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] bioperl-network/t/data 00001.xml, NONE, 1.1 bovin_small_intact.xml, NONE, 1.1 psi_xml.dat, NONE, 1.1 sv40_small.xml, NONE, 1.1 tab1part.tab, NONE, 1.1 tab2part.tab, NONE, 1.1 tab3part.tab, NONE, 1.1 tab4part.tab, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] [Bug 2004] swiss.pm parsing error with certain locations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2004] swiss.pm parsing error with certain locations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2004] swiss.pm parsing error with certain locations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2006] New: Bio::SeqIO::genbank does not parse CONSRTM field   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.131,1.132   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Annotation Reference.pm, 1.22, 1.23   Christopher John Fields
• [Bioperl-guts-l] [Bug 2006] Bio::SeqIO::genbank does not parse CONSRTM field   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2002] Infinite recursive loop in Unflattener.pm   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2003] swiss.pm doesn't parse sequence version out of swissprot files   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2007] New: Remote webblast with input file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2007] Remote webblast with input file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2007] Remote webblast with input file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2007] Remote webblast with input file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2007] Remote webblast with input file   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2004] swiss.pm parsing error with certain locations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-network/t IO_psi_xml.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-network/t ProteinNet.t,1.1,1.2   Brian Osborne
• [Bioperl-guts-l] [Bug 2008] New: Bio::Location::Split produces erroneous start/end coordinates with multiple Fuzzy sublocations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2009] New: Bio::Restriction::IO object fails to load enzymes from local file; default set always loaded instead.   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2008] Bio::Location::Split produces erroneous start/end coordinates with multiple Fuzzy sublocations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2009] Bio::Restriction::IO object fails to load enzymes from local file; default set always loaded instead.   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2010] New: Bio::Restriction::IO::bairoch has problems with enzymes with multiple sites   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2010] Bio::Restriction::IO::bairoch has problems with enzymes with multiple sites   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/t RestrictionIO.t,1.8,1.9   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Restriction/IO bairoch.pm, 1.3, 1.4 base.pm, 1.7, 1.8 withrefm.pm, 1.4, 1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-network/t ProteinNet.t,1.2,1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network ProteinNet.pm, 1.1, 1.2   Brian Osborne
• [Bioperl-guts-l] bioperl-network/t/data arath_small-02.xml, NONE, 1.1   Brian Osborne
• [Bioperl-guts-l] [Bug 2010] Bio::Restriction::IO::bairoch has problems with enzymes with multiple sites   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2008] Bio::Location::Split produces erroneous start/end coordinates with multiple Fuzzy sublocations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2008] Bio::Location::Split produces erroneous start/end coordinates with multiple Fuzzy sublocations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2008] Bio::Location::Split produces erroneous start/end coordinates with multiple Fuzzy sublocations   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/Restriction/IO bairoch.pm, 1.4, 1.5   Christopher John Fields
• [Bioperl-guts-l] bioperl-network/Bio/Network ProteinNet.pm, 1.2, 1.3   Brian Osborne
• [Bioperl-guts-l] bioperl-network/Bio/Network Edge.pm, 1.1, 1.2 IO.pm, 1.1, 1.2 Interaction.pm, 1.1, 1.2 ProteinNet.pm, 1.3, 1.4   Brian Osborne
• [Bioperl-guts-l] bioperl-live/Bio/Restriction IO.pm,1.6,1.7   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/Restriction IO.pm,1.7,1.8   Christopher John Fields
• [Bioperl-guts-l] [Bug 2011] New: Bio::Restriction::IO enhancements/code issues   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] [Bug 2010] Bio::Restriction::IO::bairoch has problems with enzymes with multiple sites   bugzilla-daemon at newportal.open-bio.org
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.7, 1.8 Segment.pm, 1.4, 1.5 Store.pm, 1.13, 1.14   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store/DBI mysql.pm, 1.10, 1.11   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm,1.3,1.4   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/scripts/Bio-SeqFeature-Store bp_seqfeature_load.PLS, 1.4, 1.5   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature/Store GFF3Loader.pm, 1.7, 1.8   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/SeqIO genbank.pm,1.132,1.133   Christopher John Fields
• [Bioperl-guts-l] bioperl-live/Bio/DB SeqFeature.pm,1.4,1.5   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.8, 1.9 Segment.pm, 1.5, 1.6 Store.pm, 1.14, 1.15   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics/Glyph translation.pm, 1.24, 1.25   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/DB/SeqFeature NormalizedFeature.pm, 1.9, 1.10 Segment.pm, 1.6, 1.7   Lincoln Stein
• [Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureBase.pm, 1.4, 1.5 Glyph.pm, 1.98, 1.99   Lincoln Stein

Last message date: Wed May 31 23:13:09 EDT 2006
Archived on: Wed May 31 23:13:19 EDT 2006

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