[Bioperl-guts-l] [Bug 2132] Use Annotation objects for Bio::SeqIO::scf comments

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Nov 3 14:54:11 EST 2006


http://bugzilla.open-bio.org/show_bug.cgi?id=2132





------- Comment #7 from nhansen at mail.nih.gov  2006-11-03 14:54 -------
Created an attachment (id=492)
 --> (http://bugzilla.open-bio.org/attachment.cgi?id=492&action=view)
Patch to Bio::SeqIO::scf makes comments Bio::Annotation::Collection obj

The new patch to scf.pm now stores the scf comments as Bio::Annotation::Comment
objects, and attaches them as a Bio::Annotation::Collection to the returned
SequenceTrace object (using the annotation method).  It also now returns a
Collection object from the method get_comments.


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