[Bioperl-guts-l] bioperl-live/t/data/seqfeaturedb test.gff3, 1.2, 1.3

Lincoln Stein lstein at dev.open-bio.org
Wed Sep 6 19:35:15 EDT 2006


Update of /home/repository/bioperl/bioperl-live/t/data/seqfeaturedb
In directory dev.open-bio.org:/tmp/cvs-serv13806/t/data/seqfeaturedb

Modified Files:
	test.gff3 
Log Message:
sorted out confusion between -canonical_strand and -true_target

Index: test.gff3
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/t/data/seqfeaturedb/test.gff3,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** test.gff3	6 Sep 2006 18:23:51 -0000	1.2
--- test.gff3	6 Sep 2006 23:35:13 -0000	1.3
***************
*** 36,40 ****
  Contig3	confirmed	UTR	34901	35000	.	+	.	Parent=trans-8
  
! # preferred group assignments
  Contig4	clone	assembly_component	1	50000	.	.	.	ID=ABC123
  Contig4	confirmed	gene	32000	35000	.	+	.	ID=thing1;gene=gene-9
--- 36,42 ----
  Contig3	confirmed	UTR	34901	35000	.	+	.	Parent=trans-8
  
! # associative attributes
! # these are not intended to have any implied parent/child relationship, but their attributes can be
! # used to group them arbitrarily.
  Contig4	clone	assembly_component	1	50000	.	.	.	ID=ABC123
  Contig4	confirmed	gene	32000	35000	.	+	.	ID=thing1;gene=gene-9



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