[Bioperl-guts-l] [Bug 2097] Parsing BLAST results with SearchIO leads to wrong frac_identical values

bugzilla-daemon at newportal.open-bio.org bugzilla-daemon at newportal.open-bio.org
Thu Sep 14 09:52:30 EDT 2006


http://bugzilla.open-bio.org/show_bug.cgi?id=2097


bix at sendu.me.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
         AssignedTo|bioperl-guts-l at bioperl.org  |bix at sendu.me.uk
             Status|ASSIGNED                    |NEW




------- Comment #4 from bix at sendu.me.uk  2006-09-14 09:52 -------
For the record, I think the perl-code was supposed to be:

          use Bio::SearchIO; 
          my $in = Bio::SearchIO->new(-file=>$blast);
          my $result = $in->next_result;
          my $hit = $result->next_hit;
          print $hit->frac_identical;

I made some changes to fix the other frac_ methods, and probably broke
frac_identical at the same time. I'll fix this soon, thank you for the bug
report.


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