[Bioperl-guts-l] bioperl-live/Bio/DB GenericWebDBI.pm,1.4,1.5

Mauricio Herrera Cuadra mauricio at dev.open-bio.org
Sun Sep 24 11:36:34 EDT 2006


Update of /home/repository/bioperl/bioperl-live/Bio/DB
In directory dev.open-bio.org:/tmp/cvs-serv15026/Bio/DB

Modified Files:
	GenericWebDBI.pm 
Log Message:
Updating URLs


Index: GenericWebDBI.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/DB/GenericWebDBI.pm,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** GenericWebDBI.pm	20 Sep 2006 10:20:01 -0000	1.4
--- GenericWebDBI.pm	24 Sep 2006 15:36:31 -0000	1.5
***************
*** 1,4 ****
  # $Id$
- # $Id$
  #
  # BioPerl module for Bio::DB::EUtilities
--- 1,3 ----
***************
*** 11,16 ****
  #
  # POD documentation - main docs before the code
! # 
! # Interfaces with new GenericWebDBI interface 
  
  =head1 NAME
--- 10,15 ----
  #
  # POD documentation - main docs before the code
! #
! # Interfaces with new GenericWebDBI interface
  
  =head1 NAME
***************
*** 48,52 ****
  =head2 Mailing Lists
  
! User feedback is an integral part of the 
  evolution of this and other Bioperl modules. Send
  your comments and suggestions preferably to one
--- 47,51 ----
  =head2 Mailing Lists
  
! User feedback is an integral part of the
  evolution of this and other Bioperl modules. Send
  your comments and suggestions preferably to one
***************
*** 65,69 ****
    http://bugzilla.open-bio.org/
  
! =head1 AUTHOR 
  
  Email cjfields at uiuc dot edu
--- 64,68 ----
    http://bugzilla.open-bio.org/
  
! =head1 AUTHOR
  
  Email cjfields at uiuc dot edu
***************
*** 96,100 ****
                  );
      $DEFAULT_RETRIEVAL_TYPE = 'pipeline';
!     $DEFAULT_RETURN_FORMAT = 'text';    
      $LAST_INVOCATION_TIME = 0;
  }
--- 95,99 ----
                  );
      $DEFAULT_RETRIEVAL_TYPE = 'pipeline';
!     $DEFAULT_RETURN_FORMAT = 'text';
      $LAST_INVOCATION_TIME = 0;
  }
***************
*** 122,130 ****
  
   Title   : url_base_address
!  Usage   : my $address = $self->url_base_address or 
             $self->url_base_address($address)
   Function: Get/Set the base URL for the Web Database
!  Returns : Base URL for the Web Database 
!  Args    : $address - URL for the WebDatabase 
  
  =cut
--- 121,129 ----
  
   Title   : url_base_address
!  Usage   : my $address = $self->url_base_address or
             $self->url_base_address($address)
   Function: Get/Set the base URL for the Web Database
!  Returns : Base URL for the Web Database
!  Args    : $address - URL for the WebDatabase
  
  =cut
***************
*** 139,143 ****
  
   Title   : proxy
!  Usage   : $httpproxy = $db->proxy('http')  or 
             $db->proxy(['http','ftp'], 'http://myproxy' )
   Function: Get/Set a proxy for use of proxy
--- 138,142 ----
  
   Title   : proxy
!  Usage   : $httpproxy = $db->proxy('http')  or
             $db->proxy(['http','ftp'], 'http://myproxy' )
   Function: Get/Set a proxy for use of proxy
***************
*** 153,157 ****
      my ($self,$protocol,$proxy,$username,$password) = @_;
      return undef if ( !defined $protocol || !defined $proxy );
!     $self->authentication($username, $password)     
      if ($username && $password);
      return $self->proxy($protocol,$proxy);
--- 152,156 ----
      my ($self,$protocol,$proxy,$username,$password) = @_;
      return undef if ( !defined $protocol || !defined $proxy );
!     $self->authentication($username, $password)
      if ($username && $password);
      return $self->proxy($protocol,$proxy);
***************
*** 163,167 ****
   Usage   : $db->authentication($user,$pass)
   Function: Get/Set authentication credentials
!  Returns : Array of user/pass 
   Args    : Array or user/pass
  
--- 162,166 ----
   Usage   : $db->authentication($user,$pass)
   Function: Get/Set authentication credentials
!  Returns : Array of user/pass
   Args    : Array or user/pass
  
***************
*** 181,186 ****
   Usage   : $db->db
   Function: Get/Set database parameter
!  Returns : string 
!  Args    : optional string 
  
  =cut
--- 180,185 ----
   Usage   : $db->db
   Function: Get/Set database parameter
!  Returns : string
!  Args    : optional string
  
  =cut
***************
*** 223,227 ****
   Function: Get/Set return mode for query (text, xml, html, asn.1, etc)
   Returns : string for return mode
!  Args    : optional string 
  
  =cut
--- 222,226 ----
   Function: Get/Set return mode for query (text, xml, html, asn.1, etc)
   Returns : string for return mode
!  Args    : optional string
  
  =cut
***************
*** 352,354 ****
  
  1;
! __END__
\ No newline at end of file
--- 351,353 ----
  
  1;
! __END__



More information about the Bioperl-guts-l mailing list