[Bioperl-guts-l] bioperl-live/t/data tmhmm.out,NONE,1.1

Torsten Seemann tseemann at dev.open-bio.org
Mon Sep 25 02:03:20 EDT 2006


Update of /home/repository/bioperl/bioperl-live/t/data
In directory dev.open-bio.org:/tmp/cvs-serv16187/t/data

Added Files:
	tmhmm.out 
Log Message:
Totally reimplemented TMHMM parser and added previously non-existent tests.


--- NEW FILE: tmhmm.out ---
# my_sequence_id Length: 178
# my_sequence_id Number of predicted TMHs:  3
# my_sequence_id Exp number of AAs in TMHs: 69.58306
# my_sequence_id Exp number, first 60 AAs:  8.42188
# my_sequence_id Total prob of N-in:        0.07306
my_sequence_id	TMHMM2.0	outside	     1    53
my_sequence_id	TMHMM2.0	TMhelix	    54    76
my_sequence_id	TMHMM2.0	inside	    77   115
my_sequence_id	TMHMM2.0	TMhelix	   116   138
my_sequence_id	TMHMM2.0	outside	   139   150
my_sequence_id	TMHMM2.0	TMhelix	   151   173
my_sequence_id	TMHMM2.0	inside	   174   178    



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