[Bioperl-guts-l] bioperl-live/Bio/Matrix Generic.pm, 1.15, 1.16 IO.pm, 1.6, 1.7 MatrixI.pm, 1.4, 1.5 PhylipDist.pm, 1.16, 1.17 Scoring.pm, 1.5, 1.6

Senduran Balasubramaniam sendu at dev.open-bio.org
Tue Sep 26 18:03:11 EDT 2006


Update of /home/repository/bioperl/bioperl-live/Bio/Matrix
In directory dev.open-bio.org:/tmp/cvs-serv29288/Bio/Matrix

Modified Files:
	Generic.pm IO.pm MatrixI.pm PhylipDist.pm Scoring.pm 
Log Message:
use base, return true

Index: Generic.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Matrix/Generic.pm,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** Generic.pm	20 Sep 2006 05:53:51 -0000	1.15
--- Generic.pm	26 Sep 2006 22:03:09 -0000	1.16
***************
*** 70,80 ****
  
  package Bio::Matrix::Generic;
- use vars qw(@ISA);
  use strict;
  
- use Bio::Root::Root;
- use Bio::Matrix::MatrixI;
  
! @ISA = qw(Bio::Root::Root Bio::Matrix::MatrixI  );
  
  =head2 new
--- 70,77 ----
  
  package Bio::Matrix::Generic;
  use strict;
  
  
! use base qw(Bio::Root::Root Bio::Matrix::MatrixI);
  
  =head2 new

Index: MatrixI.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Matrix/MatrixI.pm,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** MatrixI.pm	4 Jul 2006 22:23:18 -0000	1.4
--- MatrixI.pm	26 Sep 2006 22:03:09 -0000	1.5
***************
*** 61,70 ****
  
  package Bio::Matrix::MatrixI;
- use vars qw(@ISA);
  use strict;
  
- use Bio::Root::RootI;
  
! @ISA = qw( Bio::Root::RootI );
  
  
--- 61,68 ----
  
  package Bio::Matrix::MatrixI;
  use strict;
  
  
! use base qw(Bio::Root::RootI);
  
  

Index: PhylipDist.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Matrix/PhylipDist.pm,v
retrieving revision 1.16
retrieving revision 1.17
diff -C2 -d -r1.16 -r1.17
*** PhylipDist.pm	4 Jul 2006 22:23:18 -0000	1.16
--- PhylipDist.pm	26 Sep 2006 22:03:09 -0000	1.17
***************
*** 94,102 ****
  use strict;
  
- use vars qw(@ISA);
- use Bio::Matrix::MatrixI;
- use Bio::Root::Root;
  
! @ISA = qw(Bio::Root::Root Bio::Matrix::MatrixI);
  
  =head2 new
--- 94,99 ----
  use strict;
  
  
! use base qw(Bio::Root::Root Bio::Matrix::MatrixI);
  
  =head2 new

Index: Scoring.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Matrix/Scoring.pm,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** Scoring.pm	20 Sep 2006 05:53:51 -0000	1.5
--- Scoring.pm	26 Sep 2006 22:03:09 -0000	1.6
***************
*** 59,68 ****
  
  package Bio::Matrix::Scoring;
- use vars qw(@ISA);
  use strict;
  
- use Bio::Matrix::Generic;
  
! @ISA = qw(Bio::Matrix::Generic);
  
  =head2 new
--- 59,66 ----
  
  package Bio::Matrix::Scoring;
  use strict;
  
  
! use base qw(Bio::Matrix::Generic);
  
  =head2 new

Index: IO.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Matrix/IO.pm,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** IO.pm	20 Sep 2006 05:53:51 -0000	1.6
--- IO.pm	26 Sep 2006 22:03:09 -0000	1.7
***************
*** 65,74 ****
  
  package Bio::Matrix::IO;
- use vars qw(@ISA);
  use strict;
  
- use Bio::Root::IO
  
! @ISA = qw(Bio::Root::IO );
  
  =head2 new
--- 65,72 ----
  
  package Bio::Matrix::IO;
  use strict;
  
  
! use base qw(Bio::Root::IO);
  
  =head2 new



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