[Bioperl-guts-l] bioperl-live/t/data testfile.erpin,NONE,1.1

Christopher John Fields cjfields at dev.open-bio.org
Wed Sep 27 21:11:08 EDT 2006


Update of /home/repository/bioperl/bioperl-live/t/data
In directory dev.open-bio.org:/tmp/cvs-serv3852/t/data

Added Files:
	testfile.erpin 
Log Message:
for ERPIN tests

--- NEW FILE: testfile.erpin ---

Training set:	"/home/Administrator/pyrR.epn":
		40 sequences of length 43
Cutoff:		1.00  

Database:	"AE016879.fna"
		5227266 nucleotides to be processed in 1 sequence
		ATGC ratios: 0.322  0.324  0.176  0.178
E-value at cutoff 1.0 for 5.2Mb double strand data: 4.59e-02

>gi|30260185|gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
FW   1 5181155..5181183  30.36  1.68e-05
CTTT.aacc--.CAACC.CCGTGA.GGTTG.a.GAAG
>gi|30260185|gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
RC   1 3709092..3709121  28.97  5.61e-05
CTTT.taatt-.CAGTC.CTGTGA.GACCG.g.AAAG
RC   2 3710524..3710553  27.97  1.31e-04
TTTT.aaatg-.TAGTC.CTGTGA.GGCTG.c.CAAA
RC   3 3711223..3711251  31.64  4.44e-06
CTTT.aaca--.CAGCC.CCGTGA.GGTTG.a.GAAG

-------- at level 1 --------
10454532 bases processed
cutoff: 1.00
6 config. per site
10 hits
4 independent hits




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