[Bioperl-guts-l] [Bug 2263] New: Calling revcom() on Bio::Seq::Quality dispatches the wrong method

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Thu Apr 5 12:30:34 EDT 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2263

           Summary: Calling revcom() on Bio::Seq::Quality dispatches the
                    wrong method
           Product: BioPerl
           Version: main-trunk
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Core Components
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: mkiwala at watson.wustl.edu


Calling revcom() on a Bio::Seq::Quality invokes Bio::LocatableSeq::revcom()
instead of Bio::Seq::Meta::Array::revcom().  The problem is a bad "use base"
statement in Bio::Seq::Quality.


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