[Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy Modeltest.pm, 1.5, 1.6

Albert Vilella avilella at dev.open-bio.org
Mon Dec 3 11:19:53 EST 2007


Update of /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Hyphy
In directory dev.open-bio.org:/tmp/cvs-serv12907

Modified Files:
	Modeltest.pm 
Log Message:
modeltest doesnt need a tree, right?


Index: Modeltest.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** Modeltest.pm	3 Dec 2007 11:33:15 -0000	1.5
--- Modeltest.pm	3 Dec 2007 16:19:51 -0000	1.6
***************
*** 25,34 ****
    my $aln = $alignio->next_aln;
  
-   my $treeio = Bio::TreeIO->new(
-       -format => 'newick', -file => 't/data/hyphy1.tree');
- 
    my $modeltest = Bio::Tools::Run::Phylo::Hyphy::Modeltest->new();
    $modeltest->alignment($aln);
-   $modeltest->tree($tree);
    my ($rc,$results) = $modeltest->run();
  
--- 25,30 ----



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