[Bioperl-guts-l] bioperl-live/Bio/Graphics FeatureFile.pm, 1.85, 1.86 Panel.pm, 1.130, 1.131

Lincoln Stein lstein at dev.open-bio.org
Tue Feb 6 18:35:23 EST 2007


Update of /home/repository/bioperl/bioperl-live/Bio/Graphics
In directory dev.open-bio.org:/tmp/cvs-serv19577/Bio/Graphics

Modified Files:
	FeatureFile.pm Panel.pm 
Log Message:
finished documentation for stackedplot glyph

Index: Panel.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Graphics/Panel.pm,v
retrieving revision 1.130
retrieving revision 1.131
diff -C2 -d -r1.130 -r1.131
*** Panel.pm	23 Jan 2007 20:04:37 -0000	1.130
--- Panel.pm	6 Feb 2007 23:35:21 -0000	1.131
***************
*** 1763,1766 ****
--- 1763,1770 ----
    xyplot      Histograms and other graphs plotted against the genome.
  
+   stackedplot A column plot showing multiple data series across multiple categories.
+ 
+   ternary_plot Ternary (triangle) plots.
+ 
    whiskerplot Box and whisker plot for statistical data
  

Index: FeatureFile.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Graphics/FeatureFile.pm,v
retrieving revision 1.85
retrieving revision 1.86
diff -C2 -d -r1.85 -r1.86
*** FeatureFile.pm	20 Dec 2006 23:35:03 -0000	1.85
--- FeatureFile.pm	6 Feb 2007 23:35:21 -0000	1.86
***************
*** 579,582 ****
--- 579,583 ----
    if (defined $description && $description =~ /\w+=\S+/) { # attribute line
      my @attributes = split /;\s*/,$description;
+     undef $description;
      foreach (@attributes) {
        my ($name,$value) = split /=/,$_,2;
***************
*** 632,636 ****
    foreach (@_) {
      tr/+/ /;       # pluses become spaces
!     s/%([0-9a-fA-F]{2})/chr hex($1)/g;
    }
    @_;
--- 633,637 ----
    foreach (@_) {
      tr/+/ /;       # pluses become spaces
!     s/%([0-9a-fA-F]{2})/chr hex($1)/eg;
    }
    @_;



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