[Bioperl-guts-l] bioperl-live Build.PL,1.5.2.7,1.5.2.8

Senduran Balasubramaniam sendu at dev.open-bio.org
Wed Feb 14 06:37:04 EST 2007


Update of /home/repository/bioperl/bioperl-live
In directory dev.open-bio.org:/tmp/cvs-serv19157

Modified Files:
      Tag: branch-1-5-2
	Build.PL 
Log Message:
recommend XML::SAX 0.15, no need for Bundle::BioPerl::XMLSimple

Index: Build.PL
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Build.PL,v
retrieving revision 1.5.2.7
retrieving revision 1.5.2.8
diff -C2 -d -r1.5.2.7 -r1.5.2.8
*** Build.PL	23 Jan 2007 11:23:01 -0000	1.5.2.7
--- Build.PL	14 Feb 2007 11:37:02 -0000	1.5.2.8
***************
*** 64,73 ****
                              'XML::Parser'               => '0/parsing xml/Bio::Biblio::IO::medlinexml',
                              'XML::Parser::PerlSAX'      => '0/parsing xml/Bio::SeqIO::tinyseq,Bio::SeqIO::game::gameSubs,Bio::OntologyIO::InterProParser,Bio::ClusterIO::dbsnp',
!                             'XML::SAX'                  => '0/parsing xml/Bio::SearchIO::blastxml,Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax',
                              'XML::SAX::Writer'          => '0/writing xml/Bio::SeqIO::tigrxml',
-                             # XML::Simple requires that XML::SAX::ExpatXS be installed prior to it if XML::SAX 0.14 (and therefore
-                             # XML::SAX::PurePerl) has been installed, as is likely here. We have a bundle that installs ExpatXS
-                             # and XML::Simple in that order to handle this problem
-                             'Bundle::BioPerl::XMLSimple' => '1/parsing xml/Bio::DB::EUtilities',
                              'XML::Twig'                 => '0/parsing xml/Bio::Variation::IO::xml,Bio::DB::Taxonomy::entrez,Bio::DB::Biblio::eutils,Bio::Graph::IO::psi_xml',
                              'XML::Writer'               => '0.4/parsing and writing xml/Bio::SeqIO::agave,Bio::SeqIO::game::gameWriter,Bio::SeqIO::chadoxml,Bio::SeqIO::tinyseq,Bio::Variation::IO::xml,Bio::SearchIO::Writer::BSMLResultWriter'
--- 64,69 ----
                              'XML::Parser'               => '0/parsing xml/Bio::Biblio::IO::medlinexml',
                              'XML::Parser::PerlSAX'      => '0/parsing xml/Bio::SeqIO::tinyseq,Bio::SeqIO::game::gameSubs,Bio::OntologyIO::InterProParser,Bio::ClusterIO::dbsnp',
!                             'XML::SAX'                  => '0.15/parsing xml/Bio::SearchIO::blastxml,Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax',
                              'XML::SAX::Writer'          => '0/writing xml/Bio::SeqIO::tigrxml',
                              'XML::Twig'                 => '0/parsing xml/Bio::Variation::IO::xml,Bio::DB::Taxonomy::entrez,Bio::DB::Biblio::eutils,Bio::Graph::IO::psi_xml',
                              'XML::Writer'               => '0.4/parsing and writing xml/Bio::SeqIO::agave,Bio::SeqIO::game::gameWriter,Bio::SeqIO::chadoxml,Bio::SeqIO::tinyseq,Bio::Variation::IO::xml,Bio::SearchIO::Writer::BSMLResultWriter'



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