[Bioperl-guts-l] [Bug 2189] New: parsing of BLAST v2.2.15 multiquery reports does not generate Hits

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Wed Jan 17 13:35:13 EST 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2189

           Summary: parsing of BLAST v2.2.15 multiquery reports does not
                    generate Hits
           Product: Bioperl
           Version: main-trunk
          Platform: PC
        OS/Version: All
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Bio::Search/Bio::SearchIO
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: cjfields at uiuc.edu


Parsing of text BLAST reports where no alignment data is present (BLAST 2.2.15)
does not generate hit objects from hit table data.  This was noted on the mail
list and confirmed using bioperl-live (Sendu and I).

I am working on this at the moment; for the short term, the best workaround is
to use tabular output for reports where only hit data (no alignment data) is
needed.


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