[Bioperl-guts-l] bioperl-live/Bio/Tools Infernal.pm,1.3,1.4

Christopher John Fields cjfields at dev.open-bio.org
Thu Jan 18 00:59:45 EST 2007


Update of /home/repository/bioperl/bioperl-live/Bio/Tools
In directory dev.open-bio.org:/tmp/cvs-serv5017

Modified Files:
	Infernal.pm 
Log Message:
POD changes

Index: Infernal.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Tools/Infernal.pm,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** Infernal.pm	7 Jan 2007 22:36:05 -0000	1.3
--- Infernal.pm	18 Jan 2007 05:59:43 -0000	1.4
***************
*** 72,91 ****
    Source Tag      $sf->hsource_tag
  
- primary_tag => $mt,
- 
-                 my $hf = Bio::SeqFeature::Generic->new( -primary_tag => $mt,
-                               -source_tag  => "$st $ver",
-                               -display_name => $dt || '',
-                               -score       => $score,
-                               -start       => $start,
-                               -end         => $end,
-                               -seq_id      => $qid,
-                               -strand      => $strand
-                             );
- 
- 
  Added FeaturePair tags are : 
  
!    structure    - entire description line (in case the regex used for
                    sequence ID doesn't adequately catch the name
     model        - name of the descriptor file (may include path to file)
--- 72,78 ----
    Source Tag      $sf->hsource_tag
  
  Added FeaturePair tags are : 
  
!    secstructure - entire description line (in case the regex used for
                    sequence ID doesn't adequately catch the name
     model        - name of the descriptor file (may include path to file)



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