[Bioperl-guts-l] [Bug 2192] New: Bio::Structure::Entry get_residues() method residue leak bug

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Tue Jan 23 23:49:45 EST 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2192

           Summary: Bio::Structure::Entry get_residues() method  residue
                    leak bug
           Product: Bioperl
           Version: main-trunk
          Platform: PC
        OS/Version: Windows XP
            Status: NEW
          Severity: normal
          Priority: P2
         Component: Unclassified
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: hjian at kuicr.kyoto-u.ac.jp
                CC: kris.boulez at algonomics.com


When two or more continuous residues have insertion codes and they are with the
same residue name, get_residues() method of Bio::Structure::Entry can only get
the first residue. Other residue(s) will be omitted. For example, in PDB
structure 1tal, SER-120H will be omitted, although the previous SER-120G will
be returned properly.


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