[Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Hyphy SLAC.pm, 1.4, 1.5

Albert Vilella avilella at dev.open-bio.org
Mon Jan 29 12:17:53 EST 2007


Update of /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Hyphy
In directory dev.open-bio.org:/tmp/cvs-serv31231

Modified Files:
	SLAC.pm 
Log Message:
typo nh to newick


Index: SLAC.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm,v
retrieving revision 1.4
retrieving revision 1.5
diff -C2 -d -r1.4 -r1.5
*** SLAC.pm	17 Dec 2006 13:00:12 -0000	1.4
--- SLAC.pm	29 Jan 2007 17:17:51 -0000	1.5
***************
*** 26,30 ****
  
    my $treeio = Bio::TreeIO->new(
!       -format => 'nh', -file => 't/data/hyphy1.tree');
  
    my $slac = new Bio::Tools::Run::Phylo::Hyphy::SLAC();
--- 26,30 ----
  
    my $treeio = Bio::TreeIO->new(
!       -format => 'newick', -file => 't/data/hyphy1.tree');
  
    my $slac = new Bio::Tools::Run::Phylo::Hyphy::SLAC();



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