[Bioperl-guts-l] [Bug 2314] Bio:Graphics should handle more gracefully broken GenBank/EMBL formatted files

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Fri Jun 8 07:00:44 EDT 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2314


bix at sendu.me.uk changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
           Severity|normal                      |enhancement
           Priority|P2                          |P5




------- Comment #8 from bix at sendu.me.uk  2007-06-08 07:00 EST -------
(In reply to comment #7)
> Please update the USAGE in the script then.

The script is quite clear on what input it takes. It tells you to look at the
documentation for Bio::Graphics::FeatureFile.


> Please make the script die if the input data is in a wrong format, the program
> should never continue if the input is wrong. I believe this a general
> programming practice. ;)

I'm marking this as an enhancement request then. User-error isn't a bug.


> How can I convert GenBank/EMBL formatted file to a GFF file?

As for the rest, BugZilla is used for bug reports and enhancement requests. For
advice on how to use Bioperl and Bioperl-related discussion, please use the
mailing list: http://www.bioperl.org/wiki/Mailing_lists#Main_BioPerl_list


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