[Bioperl-guts-l] bioperl-live/examples/root/lib/Bio Seq.pm, 1.7, 1.8
Senduran Balasubramaniam
sendu at dev.open-bio.org
Thu Jun 14 10:16:21 EDT 2007
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Update of /home/repository/bioperl/bioperl-live/examples/root/lib/Bio
In directory dev.open-bio.org:/tmp/cvs-serv22328/examples/root/lib/Bio
Modified Files:
Seq.pm
Log Message:
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"
Index: Seq.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/examples/root/lib/Bio/Seq.pm,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** Seq.pm 26 Sep 2006 22:03:22 -0000 1.7
--- Seq.pm 14 Jun 2007 14:16:19 -0000 1.8
***************
*** 929,933 ****
$obj->{'_annotation'} = $value;
} elsif( ! defined $obj->{'_annotation'}) {
! $obj->{'_annotation'} = new Bio::Annotation::Collection;
}
return $obj->{'_annotation'};
--- 929,933 ----
$obj->{'_annotation'} = $value;
} elsif( ! defined $obj->{'_annotation'}) {
! $obj->{'_annotation'} = Bio::Annotation::Collection->new();
}
return $obj->{'_annotation'};
- Previous message: [Bioperl-guts-l] bioperl-live/Bio/Variation AAReverseMutate.pm, 1.13, 1.14 SeqDiff.pm, 1.24, 1.25
- Next message: [Bioperl-guts-l] bioperl-live/t AAReverseMutate.t, 1.6, 1.7 AlignIO.t, 1.74, 1.75 AlignStats.t, 1.14, 1.15 AlignUtil.t, 1.4, 1.5 Alphabet.t, 1.6, 1.7 Annotation.t, 1.23, 1.24 AnnotationAdaptor.t, 1.4, 1.5 Biblio.t, 1.12, 1.13 BiblioReferences.t, 1.11, 1.12 Biblio_biofetch.t, 1.15, 1.16 Biblio_eutils.t, 1.4, 1.5 BioFetch_DB.t, 1.15, 1.16 BlastIndex.t, 1.8, 1.9 ClusterIO.t, 1.7, 1.8 Coalescent.t, 1.7, 1.8 Compatible.t, 1.6, 1.7 CoordinateGraph.t, 1.3, 1.4 CoordinateMapper.t, 1.15, 1.16 CytoMap.t, 1.7, 1.8 DB.t, 1.78, 1.79 Domcut.t, 1.15, 1.16 ELM.t, 1.7, 1.8 EMBL_DB.t, 1.18, 1.19 EMBOSS_Tools.t, 1.4, 1.5 EncodedSeq.t, 1.5, 1.6 Exonerate.t, 1.7, 1.8 GDB.t, 1.15, 1.16 GFF.t, 1.11, 1.12 GbrowseGFF.t, 1.4, 1.5 GeneCoordinateMapper.t, 1.17, 1.18 Genewise.t, 1.8, 1.9 Genpred.t, 1.23, 1.24 GraphAdaptor.t, 1.4, 1.5 GuessSeqFormat.t, 1.11, 1.12 Handler.t, 1.1, 1.2 IUPAC.t, 1.4, 1.5 LinkageMap.t, 1.4, 1.5 LocatableSeq.t, 1.12, 1.13 Location.t, 1.34, 1.35 Map.t, 1.11, 1.12 MapIO.t, 1.7, 1.8 Matrix.t, 1.11, 1.12 MicrosatelliteMarker.t, 1.3, 1.4 Molphy.t, 1.4, 1.5 Mutator.t, 1.14, 1.15! Node.t, 1.9, 1.10 PAML.t, 1.28, 1.29 PhysicalMap.t, 1.5, 1.6 Pictogram.t, 1.7, 1.8 PopGen.t, 1.28, 1.29 PopGenSims.t, 1.5, 1.6 PrimarySeq.t, 1.24, 1.25 ProtMatrix.t, 1.5, 1.6 ProtPsm.t, 1.5, 1.6 QRNA.t, 1.2, 1.3 RandomTreeFactory.t, 1.8, 1.9 RangeI.t, 1.8, 1.9 RefSeq.t, 1.12, 1.13 RestrictionAnalysis.t, 1.9, 1.10 RootI.t, 1.9, 1.10 SNP.t, 1.2, 1.3 Scansite.t, 1.4, 1.5 SearchDist.t, 1.14, 1.15 SearchIO.t, 1.114, 1.115 Seq.t, 1.29, 1.30 SeqAnalysisParser.t, 1.5, 1.6 SeqEvolution.t, 1.1, 1.2 SeqFeatCollection.t, 1.11, 1.12 SeqFeature.t, 1.48, 1.49 SeqHound_DB.t, 1.6, 1.7 SeqPattern.t, 1.3, 1.4 SeqUtils.t, 1.20, 1.21 SequenceFamily.t, 1.1, 1.2 Sigcleave.t, 1.10, 1.11 Sim4.t, 1.14, 1.15 SimilarityPair.t, 1.5, 1.6 SimpleAlign.t, 1.54, 1.55 SiteMatrix.t, 1.6, 1.7 Species.t, 1.15, 1.16 Spidey.t, 1.2, 1.3 Symbol.t, 1.1, 1.2 TandemRepeatsFinder.t, 1.2, 1.3 TaxonTree.t, 1.5, 1.6 Tree.t, 1.15, 1.16 TreeBuild.t, 1.2, 1.3 TreeIO.t, 1.39, 1.40 UCSCParsers.t, 1.5, 1.6 WABA.t, 1.5, 1.6 alignUtilities.t, 1.5, 1.6 blast_pull.t, 1.2, 1.3 cigarstring.t, 1.5, 1.6 ePCR.t, 1.4, 1.5 embl.t! , 1.8, 1.9 entrezgene.t, 1.6, 1.7 est2genome.t, 1.5, 1.6 game.t, 1.22, 1.23 ge
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