[Bioperl-guts-l] bioperl-live/Bio/Tools/Analysis/DNA ESEfinder.pm, 1.17, 1.18

Senduran Balasubramaniam sendu at dev.open-bio.org
Thu Jun 14 10:16:19 EDT 2007


Update of /home/repository/bioperl/bioperl-live/Bio/Tools/Analysis/DNA
In directory dev.open-bio.org:/tmp/cvs-serv22328/Bio/Tools/Analysis/DNA

Modified Files:
	ESEfinder.pm 
Log Message:
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"

Index: ESEfinder.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/Tools/Analysis/DNA/ESEfinder.pm,v
retrieving revision 1.17
retrieving revision 1.18
diff -C2 -d -r1.17 -r1.18
*** ESEfinder.pm	20 Oct 2006 14:42:12 -0000	1.17
--- ESEfinder.pm	14 Jun 2007 14:16:17 -0000	1.18
***************
*** 195,199 ****
      my $seq_fasta;
      my $stringfh = new IO::String($seq_fasta);
!     my $seqout = new Bio::SeqIO(-fh => $stringfh,
                                  -format => 'fasta');
      $seqout->write_seq($self->seq);
--- 195,199 ----
      my $seq_fasta;
      my $stringfh = new IO::String($seq_fasta);
!     my $seqout = Bio::SeqIO->new(-fh => $stringfh,
                                  -format => 'fasta');
      $seqout->write_seq($self->seq);



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