[Bioperl-guts-l] bioperl-run/Bio/Tools/Run/Phylo/Phylip Base.pm, 1.11, 1.12 DrawGram.pm, 1.13, 1.14 DrawTree.pm, 1.14, 1.15

Senduran Balasubramaniam sendu at dev.open-bio.org
Thu Jun 14 11:23:11 EDT 2007


Update of /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Phylip
In directory dev.open-bio.org:/tmp/cvs-serv24084/Bio/Tools/Run/Phylo/Phylip

Modified Files:
	Base.pm DrawGram.pm DrawTree.pm 
Log Message:
removed bad "new Bio::Module" syntax, replaced with "Bio::Module->new"

Index: Base.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Phylip/Base.pm,v
retrieving revision 1.11
retrieving revision 1.12
diff -C2 -d -r1.11 -r1.12
*** Base.pm	4 Jul 2006 22:23:33 -0000	1.11
--- Base.pm	14 Jun 2007 15:23:09 -0000	1.12
***************
*** 91,95 ****
  
   Title   : new
!  Usage   : my $obj = new Bio::Tools::Run::Phylo::Phylip::Base();
   Function: Builds a new Bio::Tools::Run::Phylo::Phylip::Base object 
   Returns : an instance of Bio::Tools::Run::Phylo::Phylip::Base
--- 91,95 ----
  
   Title   : new
!  Usage   : my $obj = Bio::Tools::Run::Phylo::Phylip::Base->new();
   Function: Builds a new Bio::Tools::Run::Phylo::Phylip::Base object 
   Returns : an instance of Bio::Tools::Run::Phylo::Phylip::Base

Index: DrawGram.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm,v
retrieving revision 1.13
retrieving revision 1.14
diff -C2 -d -r1.13 -r1.14
*** DrawGram.pm	4 Jul 2006 22:23:33 -0000	1.13
--- DrawGram.pm	14 Jun 2007 15:23:09 -0000	1.14
***************
*** 19,23 ****
    use Bio::Tools::Run::Phylo::Phylip::DrawGram;
  
!   my $drawfact = new Bio::Tools::Run::Phylo::Phylip::DrawGram();
    my $treeimage = $drawfact->run($tree);
  
--- 19,23 ----
    use Bio::Tools::Run::Phylo::Phylip::DrawGram;
  
!   my $drawfact = Bio::Tools::Run::Phylo::Phylip::DrawGram->new();
    my $treeimage = $drawfact->run($tree);
  
***************
*** 134,138 ****
  
   Title   : new
!  Usage   : my $obj = new Bio::Tools::Run::Phylo::Phylip::DrawGram();
   Function: Builds a new Bio::Tools::Run::Phylo::Phylip::DrawGram object 
   Returns : an instance of Bio::Tools::Run::Phylo::Phylip::DrawGram
--- 134,138 ----
  
   Title   : new
!  Usage   : my $obj = Bio::Tools::Run::Phylo::Phylip::DrawGram->new();
   Function: Builds a new Bio::Tools::Run::Phylo::Phylip::DrawGram object 
   Returns : an instance of Bio::Tools::Run::Phylo::Phylip::DrawGram

Index: DrawTree.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-run/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm,v
retrieving revision 1.14
retrieving revision 1.15
diff -C2 -d -r1.14 -r1.15
*** DrawTree.pm	11 Jul 2006 21:35:15 -0000	1.14
--- DrawTree.pm	14 Jun 2007 15:23:09 -0000	1.15
***************
*** 20,24 ****
    use Bio::Tools::Run::Phylo::Phylip::DrawTree;
  
!   my $treedraw = new Bio::Tools::Run::Phylo::Phylip::DrawTree();
    my $treeimagefile = $drawfact->run($tree);
  
--- 20,24 ----
    use Bio::Tools::Run::Phylo::Phylip::DrawTree;
  
!   my $treedraw = Bio::Tools::Run::Phylo::Phylip::DrawTree->new();
    my $treeimagefile = $drawfact->run($tree);
  
***************
*** 157,161 ****
  
   Title   : new
!  Usage   : my $obj = new Bio::Tools::Run::Phylo::Phylip::DrawTree();
   Function: Builds a new Bio::Tools::Run::Phylo::Phylip::DrawTree object 
   Returns : an instance of Bio::Tools::Run::Phylo::Phylip::DrawTree
--- 157,161 ----
  
   Title   : new
!  Usage   : my $obj = Bio::Tools::Run::Phylo::Phylip::DrawTree->new();
   Function: Builds a new Bio::Tools::Run::Phylo::Phylip::DrawTree object 
   Returns : an instance of Bio::Tools::Run::Phylo::Phylip::DrawTree



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