[Bioperl-guts-l] [Bug 2241] New: Bio::Tools::Run::Genemark should pass -seqname arg to Bio::Tools::Genemark constructor

bugzilla-daemon at portal.open-bio.org bugzilla-daemon at portal.open-bio.org
Mon Mar 19 15:45:15 EDT 2007


http://bugzilla.open-bio.org/show_bug.cgi?id=2241

           Summary: Bio::Tools::Run::Genemark should pass -seqname arg to
                    Bio::Tools::Genemark constructor
           Product: BioPerl
           Version: main-trunk
          Platform: PC
        OS/Version: Linux
            Status: NEW
          Severity: normal
          Priority: P2
         Component: bioperl-run
        AssignedTo: bioperl-guts-l at bioperl.org
        ReportedBy: mjohnson at watson.wustl.edu


See bug #2240 and attached patch.  Bio::Tools::Run::Genemark should pass along
the display_id() of whatever seq obj is passed to the run() method along to the
constructor of Bio::Tools::Genemark.  

Also, I corrected a minor glitch in the pod docs and testcase.


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