[Bioperl-guts-l] bioperl-live Build.PL,1.24,1.25

Jason Stajich jason at dev.open-bio.org
Tue Nov 27 18:14:24 EST 2007


Update of /home/repository/bioperl/bioperl-live
In directory dev.open-bio.org:/tmp/cvs-serv22439

Modified Files:
	Build.PL 
Log Message:
dependancies enumearated for Bio::PhyloNetwork

Index: Build.PL
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Build.PL,v
retrieving revision 1.24
retrieving revision 1.25
diff -C2 -d -r1.24 -r1.25
*** Build.PL	5 Sep 2007 11:00:41 -0000	1.24
--- Build.PL	27 Nov 2007 23:14:22 -0000	1.25
***************
*** 48,52 ****
                              'GD::SVG'                   => '0/creating SVG images/Bio::Graphics::Panel',
                              # we specifically want Graph::Directed, but that has no VERSION
!                             'Graph'                     => '0/ontology engine implementation for the GO parser/Bio::Ontology::SimpleGOEngine::GraphAdaptor',
                              'HTML::Entities'            => '0/remote analysis POST submissions/Bio::SearchIO::blastxml',
                              'HTML::Parser'              => '3/screen scraping www.gdb.org/Bio::DB::GDB',
--- 48,52 ----
                              'GD::SVG'                   => '0/creating SVG images/Bio::Graphics::Panel',
                              # we specifically want Graph::Directed, but that has no VERSION
!                             'Graph'                     => '0/ontology engine implementation for the GO parser/Bio::Ontology::SimpleGOEngine::GraphAdaptor,Bio::PhyloNetwork',
                              'HTML::Entities'            => '0/remote analysis POST submissions/Bio::SearchIO::blastxml',
                              'HTML::Parser'              => '3/screen scraping www.gdb.org/Bio::DB::GDB',
***************
*** 68,73 ****
                              'XML::SAX::Writer'          => '0/writing xml/Bio::SeqIO::tigrxml',
                              'XML::Twig'                 => '0/parsing xml/Bio::Variation::IO::xml,Bio::DB::Taxonomy::entrez,Bio::DB::Biblio::eutils,Bio::Graph::IO::psi_xml',
!                             'XML::Writer'               => '0.4/parsing and writing xml/Bio::SeqIO::agave,Bio::SeqIO::game::gameWriter,Bio::SeqIO::chadoxml,Bio::SeqIO::tinyseq,Bio::Variation::IO::xml,Bio::SearchIO::Writer::BSMLResultWriter'
!                            },
      get_options         => {
                              network => { } # say 'perl Build.PL --network' to manually request network tests
--- 68,77 ----
                              'XML::SAX::Writer'          => '0/writing xml/Bio::SeqIO::tigrxml',
                              'XML::Twig'                 => '0/parsing xml/Bio::Variation::IO::xml,Bio::DB::Taxonomy::entrez,Bio::DB::Biblio::eutils,Bio::Graph::IO::psi_xml',
!                             'XML::Writer'               => '0.4/parsing and writing xml/Bio::SeqIO::agave,Bio::SeqIO::game::gameWriter,Bio::SeqIO::chadoxml,Bio::SeqIO::tinyseq,Bio::Variation::IO::xml,Bio::SearchIO::Writer::BSMLResultWriter',
! 			    'Math::Random'          => '0/Random Phylogenetic Networks/Bio::PhyloNetwork::RandomFactory',
! 			    'Algorithm::Munkres'    => '0/Phylogenetic Networks/Bio::PhyloNetwork',
! 			    'Array::Compare'        => '0/Phylogenetic Networks/Bio::PhyloNetwork',
! 			    'GraphViz'              => '0/Phylogenetic Network Visulization/Bio::PhyloNetwork::GraphViz',
!     },
      get_options         => {
                              network => { } # say 'perl Build.PL --network' to manually request network tests
***************
*** 270,272 ****
          $build->log_info("  - will not run internet-requiring tests\n");
      }
! }
\ No newline at end of file
--- 274,276 ----
          $build->log_info("  - will not run internet-requiring tests\n");
      }
! }



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